Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g01006 | ATGGCGGCACTCAGCAAATGGTCTTCTCTGTCTCTGCTTGCGCTTGCAATGGTGTTCTTCGTAACAATGGCTCTGGTGCGCAAACAAGAGGTCTCTGGAATTAGGACTGTGTTAGCGACGAAGTTTCAGAGCTCTATCAACTCATCAATGGCGACTAGGGCGGTGAATGATGATTCGGAGGAACTTAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAAAGGAGAAAATTGGGATTTTTCTCCTGTGGAACTGGCAATCCCATTGATGACTGTTGGCGTTGCGACCCCAATTGGCACCACAAACGTAAACGCCTAGCTGAATGTGGCATTGGGTTCGGCCGAAATGCTATCGGTGGTCGTGATGGTCGTTTCTACGTTGTCACTGATTCGAGCGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATCGTATTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTTAAGACCATTGATGCTCGCGGGGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATACAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTCAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGCCATATATGGATCGACCACAATTCACTCTCTAATTGTGCCGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACCATCTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGCGCTGGAGCTTCAGCAAGCTATGCGAGAGCCTCCAGCTTAG | 1167 | 47.13 | MAALSKWSSLSLLALAMVFFVTMALVRKQEVSGIRTVLATKFQSSINSSMATRAVNDDSEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWHHKRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEALELQQAMREPPA | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6539045 | 6542888 | + | CmoCh08G010060.1 | Cmo08g01006 | 387739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g01006 | 388 | PRINTS | Pollen allergen Amb family signature | 348 | 367 | IPR018082 | - | |
Cmo08g01006 | 388 | PRINTS | Pollen allergen Amb family signature | 326 | 345 | IPR018082 | - | |
Cmo08g01006 | 388 | PRINTS | Pollen allergen Amb family signature | 146 | 171 | IPR018082 | - | |
Cmo08g01006 | 388 | PRINTS | Pollen allergen Amb family signature | 122 | 139 | IPR018082 | - | |
Cmo08g01006 | 388 | PRINTS | Pollen allergen Amb family signature | 182 | 198 | IPR018082 | - | |
Cmo08g01006 | 388 | PRINTS | Pollen allergen Amb family signature | 246 | 267 | IPR018082 | - | |
Cmo08g01006 | 388 | Pfam | Pectate lyase | 186 | 363 | IPR002022 | - | |
Cmo08g01006 | 388 | Gene3D | - | 99 | 385 | IPR012334 | - | |
Cmo08g01006 | 388 | PANTHER | PECTATE LYASE | 18 | 376 | - | - | |
Cmo08g01006 | 388 | SMART | amb_all | 174 | 371 | IPR002022 | - | |
Cmo08g01006 | 388 | SUPERFAMILY | Pectin lyase-like | 76 | 376 | IPR011050 | - | |
Cmo08g01006 | 388 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 376 | IPR045032 | GO:0030570 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g01006 | Cmo14g01918 | CCT | |
Cmo06g01274 | Cmo08g01006 | CCT | |
Cmo08g01006 | Cmo14g01918 | ECH | |
Cmo06g01274 | Cmo08g01006 | ECH | |
Cmo08g01006 | Cmo17g00119 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g01006 | Cmo-Chr8:6539045 | Cmo19g00155 | Cmo-Chr19:944910 | 0 | dispersed | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo08g01006 | Cmo-Chr8:6539045 | 0 | wgd | |
Cmo17g00119 | Cmo-Chr17:645851 | Cmo08g01006 | Cmo-Chr8:6539045 | 0 | wgd | |
Cmo02g01742 | Cmo-Chr2:9932597 | Cmo08g01006 | Cmo-Chr8:6539045 | 0 | wgd | |
Cmo06g01274 | Cmo-Chr6:9615807 | Cmo08g01006 | Cmo-Chr8:6539045 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g01006 | K01728 | - | csv:101217580 | 709.523 |