Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01006 ATGGCGGCACTCAGCAAATGGTCTTCTCTGTCTCTGCTTGCGCTTGCAATGGTGTTCTTCGTAACAATGGCTCTGGTGCGCAAACAAGAGGTCTCTGGAATTAGGACTGTGTTAGCGACGAAGTTTCAGAGCTCTATCAACTCATCAATGGCGACTAGGGCGGTGAATGATGATTCGGAGGAACTTAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAAAGGAGAAAATTGGGATTTTTCTCCTGTGGAACTGGCAATCCCATTGATGACTGTTGGCGTTGCGACCCCAATTGGCACCACAAACGTAAACGCCTAGCTGAATGTGGCATTGGGTTCGGCCGAAATGCTATCGGTGGTCGTGATGGTCGTTTCTACGTTGTCACTGATTCGAGCGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATCGTATTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTTAAGACCATTGATGCTCGCGGGGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATACAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTCAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGCCATATATGGATCGACCACAATTCACTCTCTAATTGTGCCGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACCATCTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGCGCTGGAGCTTCAGCAAGCTATGCGAGAGCCTCCAGCTTAG 1167 47.13 MAALSKWSSLSLLALAMVFFVTMALVRKQEVSGIRTVLATKFQSSINSSMATRAVNDDSEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWHHKRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEALELQQAMREPPA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6539045 6542888 + CmoCh08G010060.1 Cmo08g01006 387739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01006 388 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Cmo08g01006 388 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cmo08g01006 388 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Cmo08g01006 388 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Cmo08g01006 388 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Cmo08g01006 388 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Cmo08g01006 388 Pfam Pectate lyase 186 363 IPR002022 -
Cmo08g01006 388 Gene3D - 99 385 IPR012334 -
Cmo08g01006 388 PANTHER PECTATE LYASE 18 376 - -
Cmo08g01006 388 SMART amb_all 174 371 IPR002022 -
Cmo08g01006 388 SUPERFAMILY Pectin lyase-like 76 376 IPR011050 -
Cmo08g01006 388 PANTHER PECTATE LYASE 18-RELATED 18 376 IPR045032 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01006 Cmo14g01918 CCT
Cmo06g01274 Cmo08g01006 CCT
Cmo08g01006 Cmo14g01918 ECH
Cmo06g01274 Cmo08g01006 ECH
Cmo08g01006 Cmo17g00119 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01006 Cmo-Chr8:6539045 Cmo19g00155 Cmo-Chr19:944910 0 dispersed
Cmo14g01918 Cmo-Chr14:14249841 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
Cmo02g01742 Cmo-Chr2:9932597 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
Cmo06g01274 Cmo-Chr6:9615807 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01006 K01728 - csv:101217580 709.523