Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01007 ATGTCCACCAAATTCCTCTTCTTCCCCTTCTTCTTCTTCTTCTCTCTCTCCTCTTGTGCTGCAACTACCCATGAAGAAGCTTCAATTCTTCTCTCATGGCTTCACACTTCCTCTTCCCCTGTTTCCCCTGTTTTGTCCGATTGGAATGTCCGTGACTCAACGCCCTGTAACTGGACCTCCATTACTTGTTCTCCTCAAGGCTTTGTCACTCAAATCAACATCATTTCAATCCCTCTTCATCTCCCTTTCCCTTCAAATCTCTCCTCTTTTCACTCCCTTCAAAGGCTGGTAATTTCTGATGCTAATCTCACCGGCCCCATTCCTTCCGACATTGGTGATTGCACTGAGCTCACACTCATTGATTTGAGCTCAAACAACCTTGTCGGAACAATCCCAACAACCATTGGAAAGCTCGAGAAGCTTGAGGATTTGATCTTGAACTCCAACCAGTTGGCTGGGAAAATCCCATTTGAGCTTACCAATTGTAAGTCCCTCAAGAACTTGCTCTTGTTTGACAATAAACTGAGTGGAGGAATCCCTTCTGATATGGGAAAAATGAGGAATCTTGAGATTCTTAGAGCTGGTGGAAACAGAGATATCAATGGAGAAATCCCATATCAGATCGGAAATTGCAGAAATCTAACCATTTTGGGGTTGGCTGACACTAGAATTTCAGGCCCTTTGCCTAATTCTTTAGGCAAACTTGAAAAGCTTCAAACTTTATCCATTTACACCACCATGATCTCCGGCGAGATTCCGCCGGAGCTAGGCAACTGTTCTGAGCTTGTCAACATGTTTATTTATGAAAATAGTCTCTCTGGTTCAATACCAAAGGAGATTGGTAAGCTGCAGAAGCTTGAGCAGCTGTTTCTATGGCAGAATGAGTTAGTTGGGACAATCCCACCTGAAGTTGGTGACTGTTTTAGCTTGAAAAAGATTGATCTTTCTTTGAATTTTCTTTCTGGGGCAATTCCTTCAACATTAGGAGGTCTTCCTTTCCTTGAGGAGTTCATGATTAGTAGCAATAACGTGTCGGGTTCGATCCCTTCGAATCTTTCGAATGCTACGAATCTTTCGCAGTTGCAGCTTGATAGCAATGAGATTTCTGGTTTGATCCCTCCGGAGTTGGGGATGTTAAGGAATCTGAATGTGTTCTTTGCCTGGCAGAATCAGCTGGAAGGAAACATTCCATGGAGTTTGTCGAATTGTTCATATCTTCAAGCTCTTGACTTGTCTCATAATTCATTGACAGGCAGTGTTCCTCCTGGATTGTTTCACCTCAAGAACTTGACTAATCTTTTGTTGATTTCAAATGATATCTCTGGTACATTGCCACCTGATATTGGTAACTGCAGCTCTCTTCTCCGAATGCGGCTCGGGAACAATCGGATTACAGGGGAGATCCCGGCGTCGATCGGTGCGTTACGGAGCTTGAATTTCCTTGATTTGTCAGGAAATCATCTTACAGGATCATTGCCTGCTGAGATTGGGAGCTGTGGAGCTTTGGAAATGATTGATCTAAGCAGCAATGAGCTGAAAGGCTCATTGCCTGAATCACTGTCTTCACTGTCGGAGCTTCAAGTGTTGGATGTCTCATCCAACAATTTTGTTGGTCGGATTCCAGCTAGCTTAGGACAGCTTGTTTCTTTGAATAAGCTCATTCTAGCTAGAAACTCTTTTTCAGGAACAATTCCCACATCGCTTAAACTCTGTTCAAATCTCCAACTACTTGATCTCAGCAGCAATCAACTCACCGGGAACGTACCGGTCGAGTTGGGTTCGATCGTATCGCTCGAGATCGCTCTCAACCTTAGCTGTAATGAGCTGACTGGTTCATTGCCTTTTGAAATGTCTGGACTTAATAAGCTGTCTGTTCTTGACCTTTCACATAACAGTCTTGAAGGTGATTTGAAACCGCTTGCAGGGCTTGACAATCTTGTATTGCTTAACATTTCTTTCAATGAATTCATTGGTTATCTTCCGGACAACAAGCTTTTCAGACAGCTATCACCGACCGACTTAGCTGGCAACGATGGTCTCTGTTCGTCTCTTAAAGATTCGTGTTTCGTAACGGATTCAGATAGAGAAGGACTTACGAGTGACGGTGATGATACAATGAGATCACGAAAGTTGAAGCTAGCCATTGCATTGCTTATTGTCCTGACATTTATGATGATAGTAATGGGGTTGATTGCGGTGGTTCGAGCACGAAAGATGATTCGAGACGAGGATTCGGAGATGGGAGATACTTGGCCTTGGCAATTCATACCATTCCAAAAACTGAATTTCTCTGTTGAGGAAGTGTTGAGGCTTCTTGTGGATGGCAATGTGATCGGCAAAGGGTGTTCGGGGATGGTTTATCGAGCAGAATTGGATAACGGGGAAGTGATTGCCGTGAAGAAGCTATGGCCAACAATGATGGAAATAGATAATAGCGACGATAAATGTCGAATAAGGGATTCGTTTTCGGCCGAGGTTAAAACTCTAGGCTCGATACGTCACAAGAACATCGTGAGGTTCTTGGGATGTTGTTCGAATCGAAACACGAGATTGTTAATGTACGATTATATGCCGAATGGTAGCTTGGGAAGTCTTTTACATGAGAGAAATGGGAATGCTTTGGAATGGGATCTAAGATACCAAATCTTACTTGGTGCAGCACAAGGCCTTGCCTATTTGCACCATGATTGTGTCCCTCCAATTGTTCATAGGGACATTAAGGCCAATAACATTCTCATCGGTCTCGAATTCGAGGCCTATATCGCCGATTTTGGTCTAGCCAAGCTTATCGACAACGGAGATTTCGGTAGGTCATCCAACACAGTTGCGGGCTCTTATGGATACATTGCTCCTGAATATGGTTACATGATGAAGATAACCGAGAAGAGTGATGTCTACAGCTACGGTGTTGTGATAATCGAAGTCTTAACAGGAAAACAACCGATCGACCCAACGATACCGGATGGACTACACATAGTGGATTGGGTGAGAAGAAAGAGAGGGAACGAAGTCCTTGACCCGAGCTTGCAATCGAGACCGGAGACAGAAATAGAGGAGATGATGCAAGTTTTAGGCATAGCGTTATTGTGTGTAAACTCGACACCGGACGAGCGACCGACGATGAAAGACGTGGAGGCGATGCTGAAAGGAATCAAACATGAAAGAGAAGAGTATGCAAAAGTTGATATGTTGCTCAAAGGTGGGGCCTCCCCTACAAATGGAGGGCAAGAGAAGAACAACAAGAGCTCAAATAATGGCAATGGAGTTGGAATTGAATCATCTTCTTCAAAATTGTCAACCAGAAGCTTACTCAACACAAGCTTTTCTGCTTCCTCGTTGATCTATTCATCATCATCCTCTAATGGCAGAGATAGTTAA 3378 43.69 MSTKFLFFPFFFFFSLSSCAATTHEEASILLSWLHTSSSPVSPVLSDWNVRDSTPCNWTSITCSPQGFVTQINIISIPLHLPFPSNLSSFHSLQRLVISDANLTGPIPSDIGDCTELTLIDLSSNNLVGTIPTTIGKLEKLEDLILNSNQLAGKIPFELTNCKSLKNLLLFDNKLSGGIPSDMGKMRNLEILRAGGNRDINGEIPYQIGNCRNLTILGLADTRISGPLPNSLGKLEKLQTLSIYTTMISGEIPPELGNCSELVNMFIYENSLSGSIPKEIGKLQKLEQLFLWQNELVGTIPPEVGDCFSLKKIDLSLNFLSGAIPSTLGGLPFLEEFMISSNNVSGSIPSNLSNATNLSQLQLDSNEISGLIPPELGMLRNLNVFFAWQNQLEGNIPWSLSNCSYLQALDLSHNSLTGSVPPGLFHLKNLTNLLLISNDISGTLPPDIGNCSSLLRMRLGNNRITGEIPASIGALRSLNFLDLSGNHLTGSLPAEIGSCGALEMIDLSSNELKGSLPESLSSLSELQVLDVSSNNFVGRIPASLGQLVSLNKLILARNSFSGTIPTSLKLCSNLQLLDLSSNQLTGNVPVELGSIVSLEIALNLSCNELTGSLPFEMSGLNKLSVLDLSHNSLEGDLKPLAGLDNLVLLNISFNEFIGYLPDNKLFRQLSPTDLAGNDGLCSSLKDSCFVTDSDREGLTSDGDDTMRSRKLKLAIALLIVLTFMMIVMGLIAVVRARKMIRDEDSEMGDTWPWQFIPFQKLNFSVEEVLRLLVDGNVIGKGCSGMVYRAELDNGEVIAVKKLWPTMMEIDNSDDKCRIRDSFSAEVKTLGSIRHKNIVRFLGCCSNRNTRLLMYDYMPNGSLGSLLHERNGNALEWDLRYQILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLEFEAYIADFGLAKLIDNGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVIIEVLTGKQPIDPTIPDGLHIVDWVRRKRGNEVLDPSLQSRPETEIEEMMQVLGIALLCVNSTPDERPTMKDVEAMLKGIKHEREEYAKVDMLLKGGASPTNGGQEKNNKSSNNGNGVGIESSSSKLSTRSLLNTSFSASSLIYSSSSSNGRDS 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6551945 6555540 + CmoCh08G010070.1 Cmo08g01007 387740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01007 1125 PRINTS Leucine-rich repeat signature 406 419 - -
Cmo08g01007 1125 PRINTS Leucine-rich repeat signature 620 633 - -
Cmo08g01007 1125 MobiDBLite consensus disorder prediction 1066 1100 - -
Cmo08g01007 1125 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cmo08g01007 1125 SMART serkin_6 772 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01007 1125 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cmo08g01007 1125 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 1118 - -
Cmo08g01007 1125 SUPERFAMILY L domain-like 427 682 - -
Cmo08g01007 1125 SUPERFAMILY RNI-like 204 512 - -
Cmo08g01007 1125 ProSitePatterns Protein kinases ATP-binding region signature. 778 801 IPR017441 GO:0005524
Cmo08g01007 1125 Gene3D Transferase(Phosphotransferase) domain 1 857 1066 - -
Cmo08g01007 1125 Gene3D Ribonuclease Inhibitor 387 691 IPR032675 -
Cmo08g01007 1125 SUPERFAMILY L domain-like 23 296 - -
Cmo08g01007 1125 SUPERFAMILY Protein kinase-like (PK-like) 756 1048 IPR011009 -
Cmo08g01007 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Cmo08g01007 1125 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 13 1118 - -
Cmo08g01007 1125 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Cmo08g01007 1125 Gene3D Phosphorylase Kinase; domain 1 759 856 - -
Cmo08g01007 1125 ProSiteProfiles Leucine-rich repeat profile. 622 644 IPR001611 GO:0005515
Cmo08g01007 1125 Pfam Protein tyrosine and serine/threonine kinase 775 1047 IPR001245 GO:0004672|GO:0006468
Cmo08g01007 1125 SMART LRR_typ_2 138 162 IPR003591 -
Cmo08g01007 1125 SMART LRR_typ_2 283 307 IPR003591 -
Cmo08g01007 1125 SMART LRR_typ_2 620 644 IPR003591 -
Cmo08g01007 1125 SMART LRR_typ_2 523 547 IPR003591 -
Cmo08g01007 1125 SMART LRR_typ_2 331 355 IPR003591 -
Cmo08g01007 1125 SMART LRR_typ_2 475 499 IPR003591 -
Cmo08g01007 1125 SMART LRR_typ_2 427 451 IPR003591 -
Cmo08g01007 1125 ProSiteProfiles Protein kinase domain profile. 772 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01007 1125 Gene3D Ribonuclease Inhibitor 184 386 IPR032675 -
Cmo08g01007 1125 MobiDBLite consensus disorder prediction 1072 1100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01007 - - - csv:105434583 1801.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01007 Cmo-Chr8:6551945 Cmo09g01103 Cmo-Chr9:6158256 0 dispersed
Cmo08g01007 Cmo-Chr8:6551945 Cmo08g01010 Cmo-Chr8:6571076 0 proximal
Cmo14g01916 Cmo-Chr14:14236205 Cmo08g01007 Cmo-Chr8:6551945 0 wgd
Cmo17g00120 Cmo-Chr17:661522 Cmo08g01007 Cmo-Chr8:6551945 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g842 . . . . . . . . Cmo08g01007 . . . . . . . Cpe03g01568 . . . . . . . . . . . . . . Cone14ag0208 Cone15ag0229 . . . . . . . . . . . . . . . . . Cma08g01036 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000434 1 4 5 2 3 4 5 3 4 4 4 4 5 4 3 5 4 5 6 4 4 3 3 2 3 4 3 1 2 3 107
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74539 PF07714 PK_Tyr_Ser-Thr 8.60E-44 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01007 Cmo_Chr08 FPKM 12.422222 11.477516 13.197755 13.590847 7.492509 6.330228 6.231672 11.164477 13.952658 13.188559