Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01010 ATGCTGATTTTTCATCGCGAGTTGAGAGGTATTGAACTGTTGTTGTATGATCATGTTGTAGCTCTGGTTGGACGGATGGTTGTTAAAATGTTGAGTTTGCTGCTTCTTGCTTTTCTGTTTAATACTTCACATGGATTGAATTCAGAAGGGTATTTTCTCTTGGAGCTGAAAAATGGTCTTTCTGATCCGTATCGTTTGTTGAGAAATTGGGATCCGAGCGATGGAACACCGTGCCAATGGACCGGTGTGAACTGTACTTCTGGTGTGGAACCAGTGGTCTATTCTCTTGACTTGAGCTCGAAGAATCTTTCGGGTCCTTTGAGCTCGAGCATTGGTGAACTAATCCACCTAACTTATCTTGATTTTTCCTTCAATGGATTCACGGGAAGTATACCGAAAGAGATCGGGAATTGTATGAGGTTGGAGTATCTTTTTCTGCAAAACAATAAGTTTGATGGGGAACTTCCATCTGAATTGGGGAAGTTGACTTCATTGGTTAAGTTGAATATATGTAATAATAGAATCCATGGTTCTTTTCCTGAGGAGATTGGGAATCTAGAATCCTTGTTTGAATTAGTTGCATATACGAACAACATAACGGGGCCATTGCCTCGTTCGTTTGGGAATCTCAAGAACTTGAGGATGTTTCGAGCAGGACAAAATGCGATTTCGGGAAGCTTACCAGCTGAAATAGGTCAGTGTAAGAACTTGGAAACGCTTGGCCTTGCTCAAAATCAGCTAGAAGGGGAATTACCAAAGGAGATTGGTATGCTTAGAAATTTGACTGAATTGATTCTTTGGGAGAATCAGTTTTCTGGCGTTCTACCGAAAGAGCTTGGTAATTGTACGAGTCTAACGGTTTTTGCTCTGTATCAGAACAATGTTGGTGGATCCATACCTAAGGAATTTGGGAACTTAAGCTCTTTGAAGAAGTTGTATATATACCGGACTGCGTTGAACGGAACCATTCCGAGGGAGCTTGGGAACCTTTCTCAGGCATTGGAGATCGACTTCTCAGAGAACTTTTTGAGTGGTGAGATACCTAAAGAGTTTAGTAACATAAAAGGTCTCCGATTACTGTATCTTTTTCAAAATCAGCTGACTGGTGTTATACCAAATGAACTTAGTAGCCTGAGTAATTTGACTAAACTTGATCTTTCAATCAACAACCTCAAGGGTCCTGTTCCGTTCGGGTTTCAGTATATGCCTGCATTGAGTCAATTGCAGCTTTTCGAAAACAGTTTGAGTGGCACCATTCCTCAAGGACTTGGACGTTATAGCCCGCTGTGGGTGGTCGACTTTTCGGACAACCTCTTGACAGGACGAATACCTCCCCATCTATGTCGTCACTCTAACCTGATCATCTTGAACTTGGTGTCAAATAACCTTTATGGAAATATACCTACCGGGATCTTGAACTGCGAATCGTTGTTGCAAATTCGTCTCATTGGAAACAGGTTTAGTGGCAGCTTTCCATCAGAGTTGTGTAACTTGATGAATCTTACTGGCATTGAATTGGACAAGAATAGATTCAGTGGTCCGCTTCCTCCAGAAATTAAGAATTGCCAAACGTTGCAAAGGCTGCATATTTCAAACAACTACTTTACATCTAATTTTCCTAAGGAGATAGGGAAGCTTGTGCAGTTGGTGTCGTTCAATGCTTCATCGAATCGTTTTACTGGGTCGATTCCACCAGAAATCGCCCACTGCAAGACTCTCCAACGGCTCGATCTCAGCCACAACAGGTTTGAAAATACGTTGCCGAACGAGATTGGATCTCTTTTAGAGCTGGAAATTCTCAGAGTTTCAGAAAATAAGTTATCAGGCAACATACCTGCAGAATTGAGAGACCTCTCCCGTTTGACAGAATTGCAAATGGGAGGTAATTCATTCTCTGGTAGCATTCCTATGGAGTTGGGGTCTCTAAAAAGCTTGCAGATTGCTCTGAATCTCAGTTTCAATATGTTAACTGGGACAATACCATCAGAACTTGGAAACCTGAGTCTACTGGAATATCTCCTGCTTAATAACAATCGCTTGACCGGTGAAATACCGAGCTCGTTTTCCAGTCTTTCGAGTTTAATGGGTTGCAACTTCTCCTACAACGACCTTCATGGGCCAATCCCGTTGATACCCTTGCTTCAGAACATGCTTGCTAGTAGCTTCATTGGCAATAAGGGGCTCTGTGGTGGACCTCTTGGCGACTGCAATGGAGATTTGTCGTCTCCATCTGTTCCATCTTCCGAGAGCGTAAATGCTCCTCGAGGTAGAATCATTATCGGGATTGCTGCTTCCGTCGGTGGAGTTTCTATTGTTCTAATCATGATCATCTTACATTGCATGATACATCGACCGGATATGGTGCAAAACAAGGAAAAACTATCTCTGGATTCGAACATCTACTTCCCGCCTAAGGAAGGTTTTACTTTCCGAGATCTAATTAGAGCTACAAATGGTTTTCATGAGAGCTGTGTTGTAGGAAAAGGTGCTTGTGGAACTGTCTACAAGGCAGTGATGCCTTCAGGACAGACCATTGCCGTTAAGAAGTCGATGTCGAACAGGGAAGGGAGCACCATGGAGAATAGTTTCTGGGCTGAGATTTCGACTCTGGGAAAGATCAGACATCGCAACATCGTTAAACTATATGGCTATTGCTATCACCAAGGTTCCAATCTTCTTCTTTATGAGTACATGGAAAGGGGTAGTTTGGGTGAGTTGCTTCACGGGACTGCGTCTAACTTGGAATGGCCGACTCGGTTTACAATTGCCGTGGGAGCTGCCGAGGGACTTGCTTACCTACATCATGACTGCAAACCAAGGATCATACATCGTGATATCAAATCGAATAACATTCTTCTCGATCATAACTTTGAAGCCCATGTTGGCGATTTCGGTTTGGCGAAAGTGATGGACATGCCTCATTCTAAATCAATGTCAGCCGTTGCTGGATCGTACGGTTACATCGCTCCTGAATATGCATACACCATGAAAGTCACAGAAAAATGTGACATATACAGCTATGGGGTAGTTTTACTAGAACTGCTAACCGGAAAAACTCCGGTACAGCCAGTAGATCAAGGAGGCGATCTCGTCACATGGGTCAAAATCTATCTACGAAACCATTCGATGTCGTCTGGAATACTAGACGAGCGGCTGAATCTTCAAGACCAAACCACGGTCGATCACATGCTGACAGTCCTAAAAATTGCTTTGATGTGCACAAGTCTATCTCCTTGTCAACGACCATCGATGCGGGCAGTCGTATTGATGCTTTTAGAATCTACCGAGCCCGACGAAGATCATATTCCAGCTTTAACTGATAATCTAGCTCCTAAGGACGATGCTGTCTCGTGA 3354 43.17 MLIFHRELRGIELLLYDHVVALVGRMVVKMLSLLLLAFLFNTSHGLNSEGYFLLELKNGLSDPYRLLRNWDPSDGTPCQWTGVNCTSGVEPVVYSLDLSSKNLSGPLSSSIGELIHLTYLDFSFNGFTGSIPKEIGNCMRLEYLFLQNNKFDGELPSELGKLTSLVKLNICNNRIHGSFPEEIGNLESLFELVAYTNNITGPLPRSFGNLKNLRMFRAGQNAISGSLPAEIGQCKNLETLGLAQNQLEGELPKEIGMLRNLTELILWENQFSGVLPKELGNCTSLTVFALYQNNVGGSIPKEFGNLSSLKKLYIYRTALNGTIPRELGNLSQALEIDFSENFLSGEIPKEFSNIKGLRLLYLFQNQLTGVIPNELSSLSNLTKLDLSINNLKGPVPFGFQYMPALSQLQLFENSLSGTIPQGLGRYSPLWVVDFSDNLLTGRIPPHLCRHSNLIILNLVSNNLYGNIPTGILNCESLLQIRLIGNRFSGSFPSELCNLMNLTGIELDKNRFSGPLPPEIKNCQTLQRLHISNNYFTSNFPKEIGKLVQLVSFNASSNRFTGSIPPEIAHCKTLQRLDLSHNRFENTLPNEIGSLLELEILRVSENKLSGNIPAELRDLSRLTELQMGGNSFSGSIPMELGSLKSLQIALNLSFNMLTGTIPSELGNLSLLEYLLLNNNRLTGEIPSSFSSLSSLMGCNFSYNDLHGPIPLIPLLQNMLASSFIGNKGLCGGPLGDCNGDLSSPSVPSSESVNAPRGRIIIGIAASVGGVSIVLIMIILHCMIHRPDMVQNKEKLSLDSNIYFPPKEGFTFRDLIRATNGFHESCVVGKGACGTVYKAVMPSGQTIAVKKSMSNREGSTMENSFWAEISTLGKIRHRNIVKLYGYCYHQGSNLLLYEYMERGSLGELLHGTASNLEWPTRFTIAVGAAEGLAYLHHDCKPRIIHRDIKSNNILLDHNFEAHVGDFGLAKVMDMPHSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPVDQGGDLVTWVKIYLRNHSMSSGILDERLNLQDQTTVDHMLTVLKIALMCTSLSPCQRPSMRAVVLMLLESTEPDEDHIPALTDNLAPKDDAVS 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6571076 6576046 - CmoCh08G010100.1 Cmo08g01010 387743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01010 1117 SUPERFAMILY L domain-like 474 734 - -
Cmo08g01010 1117 Pfam Protein kinase domain 821 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01010 1117 Gene3D Transferase(Phosphotransferase) domain 1 898 1108 - -
Cmo08g01010 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
Cmo08g01010 1117 SMART serkin_6 820 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01010 1117 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 30 1102 - -
Cmo08g01010 1117 Gene3D Ribonuclease Inhibitor 159 255 IPR032675 -
Cmo08g01010 1117 SUPERFAMILY Protein kinase-like (PK-like) 800 1091 IPR011009 -
Cmo08g01010 1117 ProSiteProfiles Protein kinase domain profile. 820 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01010 1117 Gene3D Ribonuclease Inhibitor 403 739 IPR032675 -
Cmo08g01010 1117 Gene3D Ribonuclease Inhibitor 334 402 IPR032675 -
Cmo08g01010 1117 Gene3D Ribonuclease Inhibitor 258 333 IPR032675 -
Cmo08g01010 1117 Gene3D Ribonuclease Inhibitor 50 158 IPR032675 -
Cmo08g01010 1117 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 30 1102 - -
Cmo08g01010 1117 Pfam Leucine rich repeat N-terminal domain 47 85 IPR013210 -
Cmo08g01010 1117 SMART LRR_typ_2 162 186 IPR003591 -
Cmo08g01010 1117 SMART LRR_typ_2 114 138 IPR003591 -
Cmo08g01010 1117 SMART LRR_typ_2 210 234 IPR003591 -
Cmo08g01010 1117 SMART LRR_typ_2 378 401 IPR003591 -
Cmo08g01010 1117 SMART LRR_typ_2 258 281 IPR003591 -
Cmo08g01010 1117 SMART LRR_typ_2 402 426 IPR003591 -
Cmo08g01010 1117 SMART LRR_typ_2 573 594 IPR003591 -
Cmo08g01010 1117 SMART LRR_typ_2 667 690 IPR003591 -
Cmo08g01010 1117 Gene3D Phosphorylase Kinase; domain 1 784 897 - -
Cmo08g01010 1117 SUPERFAMILY RNI-like 95 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01010 - - - csv:101221337 1788.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01010 Cmo17g00120 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01010 Cmo-Chr8:6571076 Cmo17g00121 Cmo-Chr17:692314 0 dispersed
Cmo16g00212 Cmo-Chr16:930310 Cmo08g01010 Cmo-Chr8:6571076 3.95E-161 dispersed
Cmo08g01007 Cmo-Chr8:6551945 Cmo08g01010 Cmo-Chr8:6571076 0 proximal
Cmo14g01912 Cmo-Chr14:14220544 Cmo08g01010 Cmo-Chr8:6571076 0 wgd
Cmo06g01278 Cmo-Chr6:9649766 Cmo08g01010 Cmo-Chr8:6571076 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g839 . . . . . . . Bma05g01270 Cmo08g01010 Cmo17g00120 . . . . . . . . . . . . . . . . . . . . . Cone14ag0207 . . . . . Chy05g00265 . . . . . . . . . . . . . . Car08g00914 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001136 3 4 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 1 1 2 2 1 0 1 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74540 PF00069 Pkinase 4.60E-48 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01010 Cmo_Chr08 FPKM 0.0 2.054785 0.069779 0.62626 0.0 0.0 0.0 0.0 0.0 0.0