Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01012 ATGGCGGCTCCAAACTGCACACTGACTTTGGCCCAGCTCCTCGGCCCCAATGTCACGAACTCCGGCGCCGCTGCCTCCTTCATCTGCGATCAATTCTCTACAACCACCACCAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCTAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCCGCCGGCGGCCTCTTTTACTACCTCTTCGGCTTCGCCTTTGCCTTCGGCAGCCCCTCCAACGCCTTCATCGGCCGCCATTTCTTCGGCCTCAAGTCAATCCCCTCCGCCACCCCCACCCCCACCGATTATAGCTTCTTCCTTTATCAATGGGCTTTCGCCATCGCCGCCGCCGGCATCACCAGCGGTTCAATTGCCGAGCGGACCCAATTCGTTGCCTATTTGATCTACTCCTCTGCTTTGACCGGCTTTGTTTACCCGGTGGTTTCCCACTGGTTTTGGTCTCCAGACGGTTGGGCCAGCCCCTCCCGATCCAATGGAAATCTCTTATTCGGAACCGGAGTCATCGATTTTGCCGGTTCGGGCGTGGTTCACATGGTGGGTGGAATCGCCGGACTTTGGGGTGCTTTAATAGAAGGCCCAAGAATCGGTCGGTTCGAAAAAACCGGACGATCCGTTGCGTTACGAGGCCATAGTGCTACGTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCACCAAAATCCTAGTTCCGTACGGTGTGGGTGATTTCTACGGACAGTGGAGCGCCGTCGGTCGGACAGCCGTTACAACCACCCTCGCCGGTTGCACAGCAGCGTTGACTACCCTTTTCGGAAAAAGAATTCTCTCCGGCCACTGGAACGTCACCGACGTTTGCAACGGATTACTCGGCGGCTTCGCCGCCATAACCTCCGGCTGCTCAGTGGTGGAGCCATGGGCGGCAGTGATATGCGGATTTGTGGCGGCGTTGGTGTTAATCAGCTTGAACAAACTGGCGGAGAAGGTGAAATTTGATGACCCATTGGAGGCAGCACAATTGCACGGCGGGTGCGGCGCGTGGGGTATAATTTTCACAGCATTGTTCGCGACAAAGGAGTATGTGAACGAGGTATACGGCGGAGAGATTGGGCGGCCACACGGGTTGTTCATGGGCGGTGGAGGGAAGTTGCTGGCGGCGCATCTGATACAGATTTTGGTGATTACTGGGTGGGTAAGCATCACAATGGGACCATTGTTTTTTGGGCTTCATAAACTGAAGCTACTGAGAATCTCGCCGGCGGATGAGATGGCCGGAATGGACATGACACGTCACGGTGGATTTGCTTACGTGTACCATGATGAAGATGAGTCATCGGCGAATGGGGTCCAGATGAGAAGGATTGAGCCAAGGGACACCAGTCCAATTGGAAATTAA 1512 55.36 MAAPNCTLTLAQLLGPNVTNSGAAASFICDQFSTTTTNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNAFIGRHFFGLKSIPSATPTPTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSALTGFVYPVVSHWFWSPDGWASPSRSNGNLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFEKTGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGVGDFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAALVLISLNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKEYVNEVYGGEIGRPHGLFMGGGGKLLAAHLIQILVITGWVSITMGPLFFGLHKLKLLRISPADEMAGMDMTRHGGFAYVYHDEDESSANGVQMRRIEPRDTSPIGN 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6583834 6585345 + CmoCh08G010120.1 Cmo08g01012 387745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01012 503 PANTHER AMMONIUM TRANSPORTER 6 498 - -
Cmo08g01012 503 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 6 498 - -
Cmo08g01012 503 ProSitePatterns Ammonium transporters signature. 206 231 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cmo08g01012 503 Gene3D Ammonium transporter AmtB like domains 26 494 IPR029020 -
Cmo08g01012 503 TIGRFAM amt: ammonium transporter 47 475 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cmo08g01012 503 Pfam Ammonium Transporter Family 50 475 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cmo08g01012 503 SUPERFAMILY Ammonium transporter 46 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01012 Cmo-Chr8:6583834 Cmo14g00042 Cmo-Chr14:211056 1.24E-08 dispersed
Cmo12g00985 Cmo-Chr12:9210128 Cmo08g01012 Cmo-Chr8:6583834 0 transposed
Cmo14g01901 Cmo-Chr14:14177695 Cmo08g01012 Cmo-Chr8:6583834 0 wgd
Cmo02g01754 Cmo-Chr2:10037187 Cmo08g01012 Cmo-Chr8:6583834 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01012 K03320 - csv:101212168 909.442