Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01052 ATGAAGTCATCGGCTCAGCTTGATTTCGCTACTTTTCAGCTCACACCTACTCGAACAAGGTTTATGTGTGATTTGATATTATCTGCAAATGGGAAGTCTGAGAAGATAGCTTCTGGTTTGTTGAATCCTTTTCTTGCCCATTTGAAGATTGCACAAGAACAGATGGCCAGAGGTGGTTATTCCATTATTCTTGAGCCAGATCCTCGCAGTGATAGAATATGGTTCACAAAGGGTACCATGGAGAGGTTTGTCCGATTTGTAAGCACCCCTGAAATTTTGGAAAGGGTGTACACTATTGAGTCAGAGATCTTACAGATTGAGGAGGCAATTGTGATTCAGGGCAACAGTGACATGGGGCCTAATGTTGTAGATGACGAGCAAGGAAAGCCTACAAAGCCTGTAGAAGGTGCCACCGAAGCAAGCAAGTCTCTTCTGGATGGTAATGAGGAGAAAGCAATTGTTCTGTACACGCCAGATGCGCACTCACTGGAGACCAATGGACATACAGTGTTAGAGGAGAACTCGAAAGCTCAGCTTCTGAAAGTCCTGGAGACACGCAAAACTATGCTTCAAAAGGAGCAAGGGATGGCGTTTGCTCGTGCTGTTGCTGCTGGTTTTGACATTGATCAGATGTCACCATTGATATCATTTGCCAACAACTTTGGAGCCTCACGATTGATGGATGCATGCGTAAAATTCAAAGAACTATGGAAAAGAAAGCATGAAAGTGGCCAATGGGTCGAAATTGAAGCAGCAGAAGCACTATCCAGCCGGCCAGATTTCTCCCCTTCCATGACTGCATCAGGGATTATACTTACAAGTATGACTGACAAGCAGACAGAATCTCAAATTGAACCATCTTCAACAAATAAGGGGAATGCAATTGCAGATGGAAACCCGCCTATGATATACCAGTCACCACCAGGTCACCAAGAGTATCTTCAAGGGCAGTATCCTCCTCATATGTACCCTCCCTGGCCCATCAATTCTCCTCCAGGTTCATTACCTGTCTTCCAAGGATATCCCATGCAAGGAATGCCTTACTATCAGAACTATGCAGGAAGTAGCCCTTTCTTTCATCCGCATTATCCAGTAACAGAGGATTCTAGATTTGGTGACGGTATGAAAATGGGAGGAAAAAGGCATTCCATGGAAAGTGGAGATAACTCCATTGGACCAGAAACATGTGAGACGAATGCTTGGAAAACAAGAATGCCTGATGATGCAGGATCAGAGCAAGAAGATTCAGAAGATCAGAGAAAAGGTAGTCGATTAGGTAAGAAGAAATCAGGCGTGGTTGTCATCCGCAACATCAACTACATTGCATCGAAGAGGCATAACTCATCAGGCAGTGAAACGGATTCACAATCTGGAAGTGAAAGTGAAGAAGGAGATTCACAGGTTATTAGTCCAGAAATTAAACACAAGAAACCTAATCGATCCTCTAGGAGCAAAGGAAAGCATCTAAATTTTGGGGATCAATCGAACACTCCTGCAAAAACTGATTCCCCTGAAGCTGAAGGACATTGGCAGGCATTCCAAAACCTTTTACTTCGGGATGCCAATGAAGAAAAACATCATGCTGATCAAAGTCTGTTCACCATGGAAAGGGAAACAAAGCAGAAAAGGCGACAGAATAAAGTTGGTGATGATCCATTAGTTGCTCAAGGATGGAACAGAGATGAAATCCAAGAAAATGGTACCACGGGCATTGATAGAGTTGGTGGAAGAATCAACCGTGTATCAAGAGCATCAAATGATGAATTATTAACTTCCAGAAGAGATAGTCTATCAGGGGATAGCCATATGAATGTGCAGGCTACAGAACTAGATGGAGGAAGAAATGGCTACAGGAGGCCCGGTAGTGATGATTTTGTGGTTTATGGACAAAAGGGTCAAAGTTACTCTAATGGCCACTTGGATCCATTAGCTATAAATGGCTTTGATAATACACAAAAAAGCTATGATAAAAACTCTTCAAATAATTTGGATGGTGATTCTTACATAGTTCCATTGAGATCAATGACAATGGATGAAGTTGGAAAAGAAGGTAGAAGTGCTGTTGACATGGATTCTGAGTTTCCATCTGCAAATCATAAGGCAGAAAATTTGTCCAACAGAGTTGCTACCTATGAGCCAGATGTTCTGAATCTGATGCCAAAGCGTGAAGCAGAAAATGAGCCTGCTGGTTATGATCCTGCTTTAGAATATGAAATGCAGGTCCATGCTGGACGCATACCAGCTTCGGATAAAAAAAAGGAAGTGGTAACTGATGTTAAACAAGGGACTAAAAGGTTGGACAAGGATCGAAAGCCAAAAATTACTCCTGATAGAAAAACTGGGGGGCCAATAAGGAAGGGAAAACCTTCTAAGTTGAGTCCTTTGGATGAAGCAAGAGCACGTGCAGAAAAGCTAAGAGCTTATAAAGCTGATCTCCGGAGATTGAAGGAGGAGAAGCTAGAGAGGCAGAAGAGAATTGCAGCAAGGGGTAATAGCACATTGCCCTCTCAGCAAACTAGAAAGCTATTGCCAACAAAAATGTCACCCAACTCTCAGAAAGGATCAAAATTTAGTGATTCAGATCCAGTATCATCATCTCCTCTGCCAAGGTTCCCTATCAGAACGGCTTCAATTAGTTCCAATGATTCCAACAAAGCTGCAAAACCCAGCAGATTGATTGGTGGAAAGCAATCAGCTGGAAACAGGTTAACTCAATCTGTATCTTCATTAGCTAAGCTCAAGAAAGATAACAGTGATGCTTCAAATGACAAAAAGGTATCCATGGCTCGTATTAGAAGATTATCAGAGCCAAAAATGAGCACCAGCGATCATGCTTCTTCCATCAAGACACGGACCACCGAGCCAGCATTAAAGGCAAAAGTAACTAAGGAGACTGAGAACAAAAAAAAGATACCTAATGAGACTGAAAGCAAAAAGAAGATATCTGCTATAATGAATTTGGATAAGAGCAAGGCTGCAACTCTTCCAGAACTTAAAATTAGAACGCCTAAGGGACCTGGCGCTACAATTGGCAACTCAATAGGAACTGAAGGTGCTTGTGCTTCCATGGAAAGAAACACGACTGAAGTCTCACATCATAATGAACTGGATGACAACCCTGTTGTTGAGAAGACTGTTGTTATGCTAGAATGTGAGAATCCCTCCATCTGTACAGGAAAACCTGATGTCCCATCAGATTTTTCTGCCACCACGGCTTTTAATTCCCAAATTGAAGTGTCCGGTGTCAGTAGAGAATCCATCAAGCACAAATCACAGGATCAGTTGAGTTCTCATGAGGTGACAGCGGATGGTGTAGATCAGGAAGCACAAAAGTTTTCATCTCCTAGTATTACTGAAAACTTATATAAAGCTCCACACGCCCGTGTATCTTCTTTTGAACATCCTTGCACACGCGTTTCAGAGTATGGAAAAGCAACCCCACCAGATTTGGAGAGTGCAACATCAGGCACTGAAACTGCTAAAGCCTATGTTCCTGATTATGGAAACGCACAATTGGAAAAGATTCCTGAAGCATCAGAGAAGTCTGAGGTAAAAAAATCATCAAAAGGGCTCAGATTATTATTGAAGTTTGGGAGAAAGAATCATAGCTCAGGTACAGATGAGCACAATGAGGAATCAGATAATATCAGCTCAAATGAGTCTGAAGCCAATGATGTTGGGGCAAATACCACTTCTCACAATGAAGTTCCTACACTGAAAAATCTGATTTCTCAAGACGAAACTCCCACTGCCAGCAAAACTCAGAAGTCTTCTCGTGCATTTTCCCTGCTATCACCTTTCCGAAGCAAGAACAGTGAAAAGAGAAGTGCATGA 3834 42.33 MKSSAQLDFATFQLTPTRTRFMCDLILSANGKSEKIASGLLNPFLAHLKIAQEQMARGGYSIILEPDPRSDRIWFTKGTMERFVRFVSTPEILERVYTIESEILQIEEAIVIQGNSDMGPNVVDDEQGKPTKPVEGATEASKSLLDGNEEKAIVLYTPDAHSLETNGHTVLEENSKAQLLKVLETRKTMLQKEQGMAFARAVAAGFDIDQMSPLISFANNFGASRLMDACVKFKELWKRKHESGQWVEIEAAEALSSRPDFSPSMTASGIILTSMTDKQTESQIEPSSTNKGNAIADGNPPMIYQSPPGHQEYLQGQYPPHMYPPWPINSPPGSLPVFQGYPMQGMPYYQNYAGSSPFFHPHYPVTEDSRFGDGMKMGGKRHSMESGDNSIGPETCETNAWKTRMPDDAGSEQEDSEDQRKGSRLGKKKSGVVVIRNINYIASKRHNSSGSETDSQSGSESEEGDSQVISPEIKHKKPNRSSRSKGKHLNFGDQSNTPAKTDSPEAEGHWQAFQNLLLRDANEEKHHADQSLFTMERETKQKRRQNKVGDDPLVAQGWNRDEIQENGTTGIDRVGGRINRVSRASNDELLTSRRDSLSGDSHMNVQATELDGGRNGYRRPGSDDFVVYGQKGQSYSNGHLDPLAINGFDNTQKSYDKNSSNNLDGDSYIVPLRSMTMDEVGKEGRSAVDMDSEFPSANHKAENLSNRVATYEPDVLNLMPKREAENEPAGYDPALEYEMQVHAGRIPASDKKKEVVTDVKQGTKRLDKDRKPKITPDRKTGGPIRKGKPSKLSPLDEARARAEKLRAYKADLRRLKEEKLERQKRIAARGNSTLPSQQTRKLLPTKMSPNSQKGSKFSDSDPVSSSPLPRFPIRTASISSNDSNKAAKPSRLIGGKQSAGNRLTQSVSSLAKLKKDNSDASNDKKVSMARIRRLSEPKMSTSDHASSIKTRTTEPALKAKVTKETENKKKIPNETESKKKISAIMNLDKSKAATLPELKIRTPKGPGATIGNSIGTEGACASMERNTTEVSHHNELDDNPVVEKTVVMLECENPSICTGKPDVPSDFSATTAFNSQIEVSGVSRESIKHKSQDQLSSHEVTADGVDQEAQKFSSPSITENLYKAPHARVSSFEHPCTRVSEYGKATPPDLESATSGTETAKAYVPDYGNAQLEKIPEASEKSEVKKSSKGLRLLLKFGRKNHSSGTDEHNEESDNISSNESEANDVGANTTSHNEVPTLKNLISQDETPTASKTQKSSRAFSLLSPFRSKNSEKRSA 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6784979 6793305 - CmoCh08G010520.1 Cmo08g01052 387785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 916 939 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 956 979 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 524 549 - -
Cmo08g01052 1277 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 1 1272 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 1084 1116 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 378 429 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 745 799 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 407 425 - -
Cmo08g01052 1277 Coils Coil 795 825 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 443 466 - -
Cmo08g01052 1277 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1272 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 1195 1277 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 897 915 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 1217 1271 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 488 502 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 1140 1164 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 1097 1116 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 443 506 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 524 553 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 1201 1216 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 829 887 - -
Cmo08g01052 1277 MobiDBLite consensus disorder prediction 822 979 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01052 - - - csv:101205835 1985.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01052 Cmo17g00154 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01249 Cmo-Chr1:10026086 Cmo08g01052 Cmo-Chr8:6784979 3.57E-82 dispersed
Cmo08g01052 Cmo-Chr8:6784979 Cmo09g00872 Cmo-Chr9:4506319 4.19E-78 dispersed
Cmo17g00154 Cmo-Chr17:880411 Cmo08g01052 Cmo-Chr8:6784979 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01052 Cmo_Chr08 FPKM 7.196389 8.176767 11.957368 12.157311 11.260272 11.252184 11.929645 24.679443 26.569731 24.706591