Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01054 ATGAAGACAGACTGTTTCTCTTCTTCACTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCCAAATCACGGGCCGTACAATCTCTCACTCTCTCCTCTAGGGTTTTGCTGCGCTTCTCTTACTTTCCTGCTCTTTCTTCTCCGACAATTTCTGCGGAAATTACGTTATCTGACCCATTGGAGACGTACTGCTCAGTATATGTATATTTGCTGTACCACTATGTACTGGCATATTTAGTGTATGATATAATGGAAGCTACTAGATGTTGGTTTAAGAAGTTCAAATCCAAAGACAATCCAAAGCCCCCTACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCGTCGAGACCACCAACCAGTGAAGAGGTACCCTCCAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATAGAAAACCACTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAGCATGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGTTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGGGATATGATGACTTTGTTGATGAGGAAAGATACTCTTACAGAAGATGAGGCTCGATTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATCCACAGAGATATCAAGCCTGATAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAGCAGGAACAACTACAGCATTGGCAAAGGAACAGGCGGATGCTTGCTTATTCTACAGTTGGAACGCCTGATTATATTGCTCCGGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGCGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCTATGTCAACTTGTAGGAAGATAGTTAATTGGAAAACTCATTTGAAATTTCCAGAAGAAGCGAAACTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCATGGTTCAAGGGCATTGAGTGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAACTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACTCAATTCAGACGTCATCGAAATCAGGTCCATGGAGAAAGATGCTGTCATCGAAAGATATTAACTTTGTGGGTTATACGTACAAGAACTTTGAAATCATCGATGATAATCAATTGCCTGGAATCGCTGAATTGAAGAAGAAGAGCACAAAATCTAAAAGACCTTCCATCAAATCTCTTTTCGAAAACGAATCTGCAATGGCGACCAATCAACAACCTGTTCAAGGCAGCTTTTTGAAACTCTTGCCTCCCCAACTAGAAGTTCCTGAGAAACCGATGAGCGCCAATGGGAAGCATTCATGA 1911 41.39 MKTDCFSSSLLLLLLLLLLHPKSRAVQSLTLSSRVLLRFSYFPALSSPTISAEITLSDPLETYCSVYVYLLYHYVLAYLVYDIMEATRCWFKKFKSKDNPKPPTNKESTGNARDASRPPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWKTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENSIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSTKSKRPSIKSLFENESAMATNQQPVQGSFLKLLPPQLEVPEKPMSANGKHS 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6806948 6813852 - CmoCh08G010540.1 Cmo08g01054 387787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01054 636 Pfam Protein kinase domain 204 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01054 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Cmo08g01054 636 Gene3D Phosphorylase Kinase; domain 1 200 285 - -
Cmo08g01054 636 Coils Coil 151 185 - -
Cmo08g01054 636 SMART pkinase_C_6 502 566 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo08g01054 636 ProSiteProfiles AGC-kinase C-terminal domain profile. 502 574 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo08g01054 636 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 124 603 - -
Cmo08g01054 636 SUPERFAMILY Protein kinase-like (PK-like) 177 554 IPR011009 -
Cmo08g01054 636 ProSiteProfiles Protein kinase domain profile. 202 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01054 636 MobiDBLite consensus disorder prediction 103 130 - -
Cmo08g01054 636 Gene3D Transferase(Phosphotransferase) domain 1 286 352 - -
Cmo08g01054 636 Gene3D Transferase(Phosphotransferase) domain 1 400 519 - -
Cmo08g01054 636 ProSitePatterns Protein kinases ATP-binding region signature. 208 231 IPR017441 GO:0005524
Cmo08g01054 636 SMART serkin_6 202 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01054 636 Gene3D Phosphorylase Kinase; domain 1 520 530 - -
Cmo08g01054 636 MobiDBLite consensus disorder prediction 99 130 - -
Cmo08g01054 636 CDD STKc_NDR_like 200 565 - -
Cmo08g01054 636 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 603 - -
Cmo08g01054 636 Pfam Protein kinase C terminal domain 520 564 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01054 Cmo17g00156 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01030 Cmo-Chr2:6257676 Cmo08g01054 Cmo-Chr8:6806948 9.26E-84 dispersed
Cmo05g00184 Cmo-Chr5:809968 Cmo08g01054 Cmo-Chr8:6806948 0 dispersed
Cmo08g00273 Cmo-Chr8:1709636 Cmo08g01054 Cmo-Chr8:6806948 2.00E-45 dispersed
Cmo08g01054 Cmo-Chr8:6806948 Cmo17g01290 Cmo-Chr17:10140158 0 dispersed
Cmo15g01451 Cmo-Chr15:9842541 Cmo08g01054 Cmo-Chr8:6806948 1.78E-83 dispersed
Cmo03g01466 Cmo-Chr3:10538177 Cmo08g01054 Cmo-Chr8:6806948 0 transposed
Cmo17g00156 Cmo-Chr17:904544 Cmo08g01054 Cmo-Chr8:6806948 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74542 PF00069 Pkinase 1.00E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01054 K08790 - csv:101205120 1077.77