Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01062 ATGTGGGGGCACGAGCGAGCAAAGGCCAATAAGGACTCTGATTTCTCGCCGGAATCTTCCTTGAGCTCCTTCGAATCTCTCCGATGGGAAGCTTTTCAAAAAAACGACAACTCTCTGCTCTTTAACGAGAATGATTCCGGCGAAATGCTCCTTCACAACTTGATCTCAGAGCCCACCTCATACCCGACGGGGAATTCTCTCCGGCAGGATCCGATCAAGGAAGAGGAGGTGGATTCGCTCGGAGAAGAAGAACCCCACAAGCCAAAATCCTACAGAGGAGTCCGCCGGCGTCCATGGGGGAAATTCGCGGCGGAGATACGGGATTCAACTAGGCATGGAGTTCGGGTTTGGCTCGGAACGTTCGATAGTGCCGAGGCGGCTGCTTTGGCTTATGATCAAGCCGCTTTCTCGATGCGGGGCGCCGCCGCCGTTCTCAATTTTCCAGTGGAAAGAGTTCAGGAATCTCTCAAGGAGATGGAAATGATCAACTCCGCCGCATACGGCGGCGACGGTGAATCTCCGGTGGTTGCTTTGAAGAGAAAACATTCTATGAGGAATAAATCAAGAAGAAAGAGCAAAAATAAAGAAGAAATTGGGAAAACAGAGAGTAATGTGGTTGTTTTGGAAGATCTTGGCCCTGATTATTTGGAAGAACTCTTGGAGCTATCTGAGAATCTCCGGCCATGGTGA 690 50.29 MWGHERAKANKDSDFSPESSLSSFESLRWEAFQKNDNSLLFNENDSGEMLLHNLISEPTSYPTGNSLRQDPIKEEEVDSLGEEEPHKPKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVQESLKEMEMINSAAYGGDGESPVVALKRKHSMRNKSRRKSKNKEEIGKTESNVVVLEDLGPDYLEELLELSENLRPW 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6866695 6867805 - CmoCh08G010620.1 Cmo08g01062 387795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01062 229 CDD AP2 89 149 IPR001471 GO:0003700|GO:0006355
Cmo08g01062 229 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Cmo08g01062 229 PANTHER DNA-BINDING DOMAIN 30 222 IPR044808 GO:0003700|GO:0009873
Cmo08g01062 229 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Cmo08g01062 229 MobiDBLite consensus disorder prediction 1 20 - -
Cmo08g01062 229 SUPERFAMILY DNA-binding domain 90 150 IPR016177 GO:0003677
Cmo08g01062 229 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Cmo08g01062 229 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Cmo08g01062 229 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Cmo08g01062 229 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Cmo08g01062 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 30 222 - -
Cmo08g01062 229 MobiDBLite consensus disorder prediction 180 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01062 Cmo-Chr8:6866695 Cmo07g00207 Cmo-Chr7:1043426 5.11E-35 dispersed
Cmo14g01846 Cmo-Chr14:13963597 Cmo08g01062 Cmo-Chr8:6866695 4.11E-64 wgd
Cmo19g00097 Cmo-Chr19:548824 Cmo08g01062 Cmo-Chr8:6866695 1.35E-46 wgd
Cmo02g01795 Cmo-Chr2:10198332 Cmo08g01062 Cmo-Chr8:6866695 2.12E-44 wgd
Cmo06g01334 Cmo-Chr6:9931260 Cmo08g01062 Cmo-Chr8:6866695 6.25E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10288 PF00847 AP2 1.10E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01062 K14516 - csv:101206564 315.079