Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01078 ATGGATGATGGTTTTCCGGTGGAATTCTGGCATACTGATCTCCATTGGCTCGACCCTCCAATACCCGTCTCCGACCCCGCTCCGGGACAGATAAGTGCTTTCGTACCATATCTGCCCCAACCCACCATCGGATCGAGGCAAAAGAACAATCCTATCACCGCCACCACCATCATCGCCACCTATTCAGAGAACGTCCACAAGAGGGTGATCGAGTACTGGAGAAAGCAGTGGCAAGAAAAAAAGAAACCAGCTGAAATGGGAGATCTAGAGAGAGAAAGAAGTCATAGGCACATGCTGAACGAGAGGATGAGGAGAGAGAAACATAGACGGAGCTATTCTGAACTCCACTCTATGCTCCCAAGTAAAACTAAGAACGACAAGAATTCGATCGTACAAATGGCGGCGAGGACGATAGAGGAGCTGAAAGCCTCAGAGGGAATGCTAAAGAAGAGAAATATAGAGCTGGAGATGGCGTTATCAGCAAAGAAGAGAAAGCAAGAGAAGGGGACAACACCAATTAGGGTTGCAGTGGCTAACCCTTCATCTGGGATAAACTCTATGCTGGGTGTTCTTAATCTTCTCAAAACTGTTGGAGTGAATGCCAAAGCTATTCATGCCACTTTCTTGGACTCTCGGTTTTCGACGCACATCGCCATTGATTCTCACATGAGAGCTGCCGAAGTGGAAAGAGCGTTGCAAATGACACTAAGCGAAGCAGAGAGGAAACTTCAAAGGCAAATGCGAGGAAGGTTCCCATGA 759 47.69 MDDGFPVEFWHTDLHWLDPPIPVSDPAPGQISAFVPYLPQPTIGSRQKNNPITATTIIATYSENVHKRVIEYWRKQWQEKKKPAEMGDLERERSHRHMLNERMRREKHRRSYSELHSMLPSKTKNDKNSIVQMAARTIEELKASEGMLKKRNIELEMALSAKKRKQEKGTTPIRVAVANPSSGINSMLGVLNLLKTVGVNAKAIHATFLDSRFSTHIAIDSHMRAAEVERALQMTLSEAERKLQRQMRGRFP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6942893 6944076 - CmoCh08G010780.1 Cmo08g01078 387811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01078 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 158 IPR036638 GO:0046983
Cmo08g01078 252 Gene3D - 87 154 IPR036638 GO:0046983
Cmo08g01078 252 CDD bHLH_AtbHLH_like 97 142 IPR045239 -
Cmo08g01078 252 PANTHER TRANSCRIPTION FACTOR BHLH92 8 246 - -
Cmo08g01078 252 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 8 246 IPR044658 -
Cmo08g01078 252 Pfam Helix-loop-helix DNA-binding domain 95 141 IPR011598 GO:0046983
Cmo08g01078 252 SMART finulus 98 147 IPR011598 GO:0046983
Cmo08g01078 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 141 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01078 - - - cmax:111494781 447.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01078 Cmo17g00176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01078 Cmo-Chr8:6942893 Cmo10g00753 Cmo-Chr10:3491129 5.41E-07 dispersed
Cmo17g00176 Cmo-Chr17:1033327 Cmo08g01078 Cmo-Chr8:6942893 2.25E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g612 . . . . . . . . Cmo08g01078 Cmo17g00176 . . . . . . . . . . . . . . Cla06g00637 Cam06g0681 Cec06g0684 Cco06g0690 Clacu06g0667 Cmu06g0659 Cre06g1427 . . . Cone4ag0295 . Csa02g01090 Chy05g00351 . . . . . . . . Bma06g01583 . . . Cma08g01106 Cma17g00179 Car08g00979 Car17g00161 Cpe12g00155 . . . . . . . . . . . . . . . Lsi09g01263 . . Cme05g00532
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008643 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10292 PF00010 HLH 3.20E-07 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01078 Cmo_Chr08 FPKM 44.218243 48.873379 39.252323 41.048656 28.799608 23.480091 29.905535 30.013866 27.277664 30.184757