Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01093 ATGTTCGAATCGGCGAGCCCGACAACCCAACGGGTTCTATCATCATCTTCTTCTTCGTCTACTGATACCAGAGGAAAACATAGGATTCAGGCTGAAGTGAAGCGGCTCGAGCTAGAAGCAAGGTTCCTGGAGGAAGAAGTGGAACAGGTAGAAAAACTGGAGAAGGCATCAACAAAATGCAAAGAAATGCTGAGCAATATGGACACAAGACCAGACCCACTTCTTCCACTAACCCGTGGCCCTCTTAATCCGCTATGGGATCGATGGTTCGAAGGTCTGCAAGATTCGAAAGGTTGCCGATGCTGGATGCTTGCGAAATCTGTAACACGTTTTCCGCCGTCGATCATCCGGCGGCAATTCCGAAGCTATCAACACCAAAATAATTCGTATTCCTTTGGAATCTCCGTACCTCTCTCTGCTTTAATCACCATCTCCATTTTCTCACTTTCCATTTCCTTCTCCAAATTCGAAATTCCCCTCACAATGGCACAATCTCTGCAACTTTTCACCTCCTCCACCACCCGCTCTCCGCCCATTTCTCTCTCGAAACATTCCCTCTCAAAACCCCCCTCCTCTTCCACCGCCACCTTCCGCCTCCCTGTCTCCTTCAACCAATTTTCAATTCGAGCCTCTTCCTCTCCGGATCTCAACCCTCTGTCATCAGCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGTTCGAGTTCCGGAGGTGGGTTTGTGTCTACTTCTGCTACTACCAGGGAGTTTGTGCCGGCTGTGTCTGATGGCAGCTCGATTGACGTCGATACTGTCACGGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGTACAAGGAGGACGAAGCTTGTGTGTACTATTGGTCCTGTTACTTGCGGATTTGAGCAGCTTGAAGCGCTTGCTGTTGGCGGTATGAATGTTGCGAGGATCAATATGTGCCATGGAACTCGAGAGTGGCATCGGATGGTCATTGAACGCGTGCGCAGGCTCAATGAGGAGAAGGGCTATGCTGTGGCTATTATGATGGATACTGAAGGGAGTGAAATTCATATGGGTGATCTTGGTGGAGCTTCCTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACCATTAATGTGAACTACGAAGGGTTTGCAGAAGATGTGAGAGTTGGTGATGATCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAAGTAATCGAAAAGATTGGTCCTGATGTTAAGTGCCTGTGTACTGACCCGGGGTTGTTGTTGCCACGGGCTAATTTGACTTTTTGGAGGGATGGACATCTCGTACGAGAACGTAACGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTTCTGAAGGTGTTGATTTTCTTGCCATATCATTTGTGAAGTCTGCTGAAGTGATTAAACATCTCAAAAGCTATATTGCTGCACGTTCTCGTGGCAGTGACATTTCCATCATTGCGAAGATAGAGAGTCTGGACTCATTGAAGAACTTGGAAGAAATTATTGTAGCATCTGATGGAGCTATGGTAGCCAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTATGCAGGCGGTTAAATAAGCCAGTTATTGTTGCCTCTCAGCTGCTCGAGTCGATGATCGAATACCCTACACCTACCAGAGCTGAAGTCGCTGATGTTTCCGAGGCTGTTAGGCAGCGAGCAGATGCTCTAATGCTCTCTGGTGAGTCCGCCATGGGCCAGTTCCCCGAGAAGGCATTGACCGTCTTGAGAAGCGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGCCATGAAGCTATGGAACTCCCAGAAGTTGGATCTTCATACTCGGATAGCATCTTAGAAGAGATCTGCAATTCCACCGCCAAAATGGCCAATAATTTGGAGGTGGATGCAATTTTTGTCTACACAAAGACAGGCCACATGGCATCTCTCCTATCCCGTTGCAGACCCGATTGCCCGATCTTTGCGTTTACTTCCACGACATCTGTGAGGAGACGTCTTAACTTGCAATGGGGCTTGATACCCTTCCGCTTGAGCTTCTCGGACGACATGGAAAACAACCTCAACAAAACGTTTATGCTGCTTAAAGCCAGAAACTTGATAAAATCAGGTGACCTTAAAAAGAGGGGTTCTGTAATGTGCTTGCTTGCTCTGATGTTTCATTCCCCCAAACTATTTGACTTAATCTAA 2295 47.32 MFESASPTTQRVLSSSSSSSTDTRGKHRIQAEVKRLELEARFLEEEVEQVEKLEKASTKCKEMLSNMDTRPDPLLPLTRGPLNPLWDRWFEGLQDSKGCRCWMLAKSVTRFPPSIIRRQFRSYQHQNNSYSFGISVPLSALITISIFSLSISFSKFEIPLTMAQSLQLFTSSTTRSPPISLSKHSLSKPPSSSTATFRLPVSFNQFSIRASSSPDLNPLSSASTSQVLVSENGSSSGGGFVSTSATTREFVPAVSDGSSIDVDTVTEAELKENGFRSTRRTKLVCTIGPVTCGFEQLEALAVGGMNVARINMCHGTREWHRMVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDDLLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGISEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRRLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPEKALTVLRSVSLRIEKWWRDEKRHEAMELPEVGSSYSDSILEEICNSTAKMANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFMLLKARNLIKSGDLKKRGSVMCLLALMFHSPKLFDLI 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7016518 7023081 - CmoCh08G010930.1 Cmo08g01093 387826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01093 764 Pfam GGL domain 31 104 IPR015898 GO:0007186
Cmo08g01093 764 MobiDBLite consensus disorder prediction 174 194 - -
Cmo08g01093 764 PRINTS Pyruvate kinase family signature 555 579 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 PRINTS Pyruvate kinase family signature 336 352 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 PRINTS Pyruvate kinase family signature 503 529 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 PRINTS Pyruvate kinase family signature 580 598 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 PRINTS Pyruvate kinase family signature 471 485 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 PRINTS Pyruvate kinase family signature 530 554 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 PRINTS Pyruvate kinase family signature 599 615 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 TIGRFAM pyruv_kin: pyruvate kinase 279 741 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 MobiDBLite consensus disorder prediction 1 28 - -
Cmo08g01093 764 ProSitePatterns Pyruvate kinase active site signature. 501 513 IPR018209 GO:0004743|GO:0006096
Cmo08g01093 764 Gene3D - 279 621 IPR040442 -
Cmo08g01093 764 Gene3D - 347 453 IPR015806 GO:0004743|GO:0006096
Cmo08g01093 764 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 263 625 IPR015813 GO:0003824
Cmo08g01093 764 Pfam Pyruvate kinase, alpha/beta domain 649 741 IPR015795 -
Cmo08g01093 764 Gene3D - 622 740 IPR036918 -
Cmo08g01093 764 MobiDBLite consensus disorder prediction 1 24 - -
Cmo08g01093 764 Coils Coil 26 63 - -
Cmo08g01093 764 SMART G_gamma_2 30 104 - -
Cmo08g01093 764 SUPERFAMILY PK beta-barrel domain-like 348 439 IPR011037 -
Cmo08g01093 764 SUPERFAMILY PK C-terminal domain-like 610 741 IPR036918 -
Cmo08g01093 764 PANTHER PYRUVATE KINASE 246 741 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo08g01093 764 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 246 741 - -
Cmo08g01093 764 Pfam Pyruvate kinase, barrel domain 279 624 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01093 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101218017 1011.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01093 Cmo14g01801 CCT
Cmo08g01093 Cmo17g00193 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01822 Cmo-Chr2:10314659 Cmo08g01093 Cmo-Chr8:7016518 1.16E-28 dispersed
Cmo04g00460 Cmo-Chr4:2287623 Cmo08g01093 Cmo-Chr8:7016518 0 dispersed
Cmo08g01093 Cmo-Chr8:7016518 Cmo16g00321 Cmo-Chr16:1468814 0 dispersed
Cmo14g01801 Cmo-Chr14:13804488 Cmo08g01093 Cmo-Chr8:7016518 8.82E-33 wgd
Cmo17g00193 Cmo-Chr17:1149094 Cmo08g01093 Cmo-Chr8:7016518 0 wgd
Cmo19g00015 Cmo-Chr19:106251 Cmo08g01093 Cmo-Chr8:7016518 4.96E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g582 Blo01g00107 Blo12g00347 Bda03g00858 Bda08g00260 . . Bma04g00758 Bma05g01087 Cmo08g01093 Cmo17g00193 . Cma14g01761 . Car14g01587 . . Cpe03g01477 Bhi01g00745 Tan10g0772 . Lac12g2240 Hepe05g1598 . Lcy11g1595 . . . . . . . . . . . Lsi05g01650 Csa02g01117 . Cme06g00561 . . . . Bpe05g00877 . . . Sed02g1357 . Cmo14g01801 Cma08g01118 Cma17g00199 Car08g01001 Car17g00176 Cpe12g00170 Cpe17g00167 Bhi12g02247 Tan06g2475 Cmetu05g0135 . Hepe03g0235 . Lcy13g0318 Cla05g00499 Cam05g0547 Cec05g0560 Cco05g0558 Clacu05g0544 Cmu05g0516 Cre05g0584 Lsi09g01286 Csa03g01278 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01093 Cmo_Chr08 FPKM 16.56496 15.667377 17.940138 19.998878 11.167937 12.112041 13.023358 29.723461 30.07262 36.5051