Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01105 ATGGCGGAAGCAGAGACAGGATCAGCTACAGGCAGCAGTGGCGGAAGAGCGGAGGCGTCGCTGAAGGACAAGGGCAATGAGTTTTTCAAAGCAGGAAACTATCTCAAAGCGGCTGCACTTTACACTCAGGCTATCAAGCTAGACCCTTCGAATCATGCTCTTTATAGCAATCGTGCTGCTGCCTTTCTGCATCTAGTTAAGCTTAACAAAGCACTTGCCGACGCTGAGATGACAATTTCATTGAACCCACAATGGGAAAAGTTCCGTTCATTCAGTCTCTGCAGTTTTGATATGCCACAGGGATATTTCAGAAAGGGATGCGTTTTGGAAGCCATGGAAAAATATGACGATGCATTGTCTGCATTTCAAGCCGCCTTACAGTACAATCCACAAAGTGCAGAAGTCTCAAGAAAGATCAAAAGGGTTTCACAGTTAGTGAAAGATAAAATGAGAGCCCAAGAAGTGGAGAACAAGAGATCAAATATAGATATGAAGAAGCACTTGGATAAGCTGAAATCTGAACTGTCTGACAAATATGGCTCGGAAGAAGGCTGCAAAGACATATTTTCTTTTCTTGTTGAAACAATGGAGGCTGCTGTGAGATCATGGCATGAAACTTCCAATGTGGATGCTAAAGTGTACTATTTACTCGATAAGGAAAAGACGGATACCGAAAAATATGCTCCAATTGTTAACATTGATAAGGCATTTGCATCGCCTCACACGCATGGTGATTGTTTTCAATTCTTAAGGAAATATGCCGAGGATTCAGTCGCCCGAGCAGCATGCTTAGTTGCTCCCAAAAGCTTGATATCTTACCCACAGGTCTGGAAAGGACAAGGTTCAAGAAAATGGAAGCATGGACAGCATGATGGTTTCTTTGTTCAGCTTGAAACTCCTTCCCTAAGAAAGCTATGGTTTGTTCCTAGTTCCAATGAACTGGGACGACCATTGTGCCGGGATCCTGAGGTTCTGGATATCGGTGCACATGAACTAATACCGCGCATATTTAAAGAAAAGCTGTCGAGCACTTAG 1035 43.48 MAEAETGSATGSSGGRAEASLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEMTISLNPQWEKFRSFSLCSFDMPQGYFRKGCVLEAMEKYDDALSAFQAALQYNPQSAEVSRKIKRVSQLVKDKMRAQEVENKRSNIDMKKHLDKLKSELSDKYGSEEGCKDIFSFLVETMEAAVRSWHETSNVDAKVYYLLDKEKTDTEKYAPIVNIDKAFASPHTHGDCFQFLRKYAEDSVARAACLVAPKSLISYPQVWKGQGSRKWKHGQHDGFFVQLETPSLRKLWFVPSSNELGRPLCRDPEVLDIGAHELIPRIFKEKLSST 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7073595 7077002 - CmoCh08G011050.1 Cmo08g01105 387838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01105 344 PANTHER TPR REPEAT CONTAINING PROTEIN 19 340 IPR045248 GO:0006457|GO:0030544|GO:0051879
Cmo08g01105 344 SUPERFAMILY TPR-like 20 142 IPR011990 GO:0005515
Cmo08g01105 344 Pfam Tetratricopeptide repeat 100 131 IPR013105 -
Cmo08g01105 344 Pfam TPR repeat 25 63 - -
Cmo08g01105 344 SMART tpr_5 52 85 IPR019734 GO:0005515
Cmo08g01105 344 SMART tpr_5 99 132 IPR019734 GO:0005515
Cmo08g01105 344 SMART tpr_5 18 51 IPR019734 GO:0005515
Cmo08g01105 344 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 19 340 - -
Cmo08g01105 344 ProSiteProfiles TPR repeat profile. 18 51 IPR019734 GO:0005515
Cmo08g01105 344 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Cmo08g01105 344 Gene3D Tetratricopeptide repeat domain 18 144 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01105 - - - csv:101202929 595.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01105 Cmo17g00208 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01105 Cmo-Chr8:7073595 Cmo16g01100 Cmo-Chr16:7756958 4.18E-15 dispersed
Cmo17g00208 Cmo-Chr17:1223519 Cmo08g01105 Cmo-Chr8:7073595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g544 Blo01g00117 . . Bda08g00245 . . . Bma05g01100 Cmo08g01105 Cmo17g00208 . . . . . . . . . . . . . . Cla06g00604 Cam06g0642 Cec06g0645 Cco06g0648 Clacu06g0629 Cmu06g0623 Cre06g1390 . . Cone7ag0272 Cone4ag0265 . Csa02g01134 Chy05g00391 . . . . . Bpe05g00892 . . . . . . Cma08g01131 Cma17g00217 Car08g01012 Car17g00193 Cpe12g00184 Cpe17g00158 . . . . . . . . . . . . . . Lsi09g01301 . . Cme05g00478
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007919 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01105 Cmo_Chr08 FPKM 84.109657 89.287514 77.052628 76.256851 109.539238 106.311577 122.808556 96.744064 99.302765 104.432129