Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01110 ATGGGTACCATTGGTGATAATTGGGGTGATGATTGTTCTGTCATCAAAGACAGAGGAGAGATTTCCTACATCGACTATGAAGATGATAAATCTGTTTGCAGCTACAATCCTATTGAGGAAGGTCCAATTATCATTTCAGTGCCATTTGCTTTTGTGAATGGCAAACCACAATCAGTTTTTGTAGGAGAATCAGTGGCAGATGCAATTACGATCAAGAACACCACCGATGAATCGGTGGACCTATGGGCTGTTAATATTTATGCATCTAATCCCGAGAACTCGTTTACGCTCTCTCTAATGGAGCCCCCTTCGGCAAATGCGAACATAGAAGTTGTACAAGCTTTTTTGGAGTCCTTTTCGTTGGAGGATAGAATGATCCATCCGGGCGAGACTCTTACTGTATGGCTGTCTTGCAAACCGAAAGAAATTGGCTTGCACACGACTGTTGTGCATTTTGATGTTGGCAATGAGAGAATAGAACGCGTTTCTTTTCTGTTAGCAGATGATAAGATTTCCCAGTCATTGGCTTCTAGGAAGCCGTATTCAAGAGATAGAAAAAAGAGGCACGAGGTAGCAGACTCTTATATTCCTGGCTCACGTCCCATTAGAACGCAAGGTCGAGGATTCAAAAATTTTCTTCCCCATTATGATATCCCAAGAAGAATTAGAGATGAACTTAACAGAAAGGAGACTCCTAGTGCTGTTAGGGAAGGACTTAAAAGAGATACCTACGTTCCCTACTTTATGACTTTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTACGATATGGAACGTGTAACTATGAAAAGAAAGGGACATCATTTTTTGTGCCTTGAGGTTCCAGGGCTTGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTTTATTCTTGCCAAGATGCCTTCTGGACATGCAAATGACACGGTTAACGCTTATCAGGTCTTGGGCTATATTCATCACGTCGAGGCTGATGAGGTTTACCTAAAATTTGCTCCAGAATTTCACGTTAACCACAGAGACTTCAATCTATACAATGTCCAGTTTACCTATAACAGAATTAACATGAGGAGGTTCTATCAGGCTATTGATGCTGCAGATAGTTTGGCAAAGGAGTTTCTATTCCCATATGAGTTTTCGGATAGAAGAGTTATCAAGACTAATCCGCTGGTGCCTATAACTCAAAATATCAACGAGGAACAAATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGAGCACCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAGACCTTGGTGGAAGCTATCCTTCAACTCTACACAACTAGAAAGAATGCTCGTATTCTTGTTTGTGCTCCTTCAAATAGTGCTGCAGACCACATACTGGAGAAACTCCTCAGTGAGGAGGGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTTAATGCAAGCTCACGGCAATATGAGGAAATCAAGCCTGATCACCTTCGTTTTTGTTTCTTTGATGAGCAAATTTTCAAGTGTCCTCCACACAGTGCCCTTGTGCGCTATAGGATTATTGTGTCAACTTATACAAGTACTTCCCTTCTTTATGCGGAAGATATCAAGCGTGGCCACTTCTCTCACATTTTCTTAGATGAGGCTGGCCAAGCTTCAGAGCCAGAAACGATAATTCCTATATCCAACCTTTGTCTTAGGAAAACAGTCGTTGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCTAAAGAAGCAGAAATTTATGGATTGAGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAATATTACTGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCGGATATCTTACATCTTCCTTCTACATTGTTCTATGGTGGTGAATTAATTGCATGTAAAGATGAAAAAAGTTTCCTCACGGATTCAGCAGATATCCTTGAAGTACTTCCTAGTAAGGAGTTTCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGAGGGAAGGCAACAATCCATCATGGTTCAACCGAATTGAGGTTAGCAAGGTGGTAGAGGTTATAAAGAAACTGACTGCTGGTGGAAATCTGGTCGACGAAAATATTGGGGTCATAACGCCGTATCGACAACAAGTGATTAAAATAAGGAAAGCCCTTGATAGCCTGGATATGGTTGATATAAAGGTCGGTAGTGTAGAACAGTTTCAAGGACAAGAGAAGCAAGTGATTATTGTTTCTACTGTTCGATCAACGATCAAACATAACGAGTTTGACAGAACCTACTGTTTGGGGTTTTTAAGTAATCCAAGAAGGTTTAATGTGGCTATTACCCGGGCGATATCTCTTCTGGTTATAATTGGCAATCCCCATATAATCTATCAGGATGTGTATTGGAGCAAGCTATTATGGCAGTGTGTTGACAAAGATTCATATCAAGGTTGCTCCCTCCCTGAAAGGCAGGATCCCACAGATGAGGAACTTCCATGCAATAACGAAGAGGGACCATGTTCAGGATTTGAAGGAGCAGGGAAGAATCATGAGGGACAAAGTTCAGGATTTGAAGGAGCTGACCAGAATCAAGATCTGCCGGAGATGGAATTTTCGAGACCGGTTGTTAATGAAGATGAATGGTCTGATGGTTGGAAGTAA 2691 41.21 MGTIGDNWGDDCSVIKDRGEISYIDYEDDKSVCSYNPIEEGPIIISVPFAFVNGKPQSVFVGESVADAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPSANANIEVVQAFLESFSLEDRMIHPGETLTVWLSCKPKEIGLHTTVVHFDVGNERIERVSFLLADDKISQSLASRKPYSRDRKKRHEVADSYIPGSRPIRTQGRGFKNFLPHYDIPRRIRDELNRKETPSAVREGLKRDTYVPYFMTLLNMEEIQLEEDMRAYDMERVTMKRKGHHFLCLEVPGLAERRPSLVHGDFILAKMPSGHANDTVNAYQVLGYIHHVEADEVYLKFAPEFHVNHRDFNLYNVQFTYNRINMRRFYQAIDAADSLAKEFLFPYEFSDRRVIKTNPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTRKNARILVCAPSNSAADHILEKLLSEEGVEIRDNDVFRLNASSRQYEEIKPDHLRFCFFDEQIFKCPPHSALVRYRIIVSTYTSTSLLYAEDIKRGHFSHIFLDEAGQASEPETIIPISNLCLRKTVVVLAGDPMQLGPVIYSKEAEIYGLSKSYLERLFECEYYCTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDEKSFLTDSADILEVLPSKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEVIKKLTAGGNLVDENIGVITPYRQQVIKIRKALDSLDMVDIKVGSVEQFQGQEKQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAITRAISLLVIIGNPHIIYQDVYWSKLLWQCVDKDSYQGCSLPERQDPTDEELPCNNEEGPCSGFEGAGKNHEGQSSGFEGADQNQDLPEMEFSRPVVNEDEWSDGWK 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7093992 7098085 + CmoCh08G011100.1 Cmo08g01110 387843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01110 896 Gene3D - 625 831 IPR027417 -
Cmo08g01110 896 Pfam AAA domain 401 496 IPR041677 GO:0004386
Cmo08g01110 896 Pfam AAA domain 516 589 IPR041677 GO:0004386
Cmo08g01110 896 PANTHER RNA HELICASE SDE3-RELATED 5 844 - -
Cmo08g01110 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 816 IPR027417 -
Cmo08g01110 896 CDD SF1_C_Upf1 627 819 IPR041679 -
Cmo08g01110 896 CDD DEXXQc_Helz-like 402 626 - -
Cmo08g01110 896 MobiDBLite consensus disorder prediction 882 896 - -
Cmo08g01110 896 MobiDBLite consensus disorder prediction 828 896 - -
Cmo08g01110 896 PANTHER DNA2/NAM7 HELICASE FAMILY 5 844 IPR045055 -
Cmo08g01110 896 Gene3D - 323 612 IPR027417 -
Cmo08g01110 896 Pfam AAA domain 596 803 IPR041679 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01110 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - csv:101209925 1570.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01110 Cmo-Chr8:7093992 Cmo15g00818 Cmo-Chr15:4083313 7.34E-50 dispersed
Cmo08g01110 Cmo-Chr8:7093992 Cmo16g01137 Cmo-Chr16:8089566 4.97E-45 transposed
Cmo08g01110 Cmo-Chr8:7093992 Cmo06g00859 Cmo-Chr6:4850147 3.78E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01110 Cmo_Chr08 FPKM 0.687556 0.0 1.446091 1.395393 5.72384 5.690252 6.163513 0.0 0.0 0.0