Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01120 ATGGAGGACGGTGTGAGATCTGGGGGACCATCGGGGGTTTTGGTGAAGACTCGGAACTCGTCCGGTTGCTTAATTGTTAGAAAGAAAGAGGATGGATTAGGGGGCGCCGGTTCTTCGGCCTCACGCTTGCTTCATGCGAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGTAGACGGGTTGATCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGAAAAGGATGATATGGACGAGAGGGGAAGCATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGTTCTGCTCAACAGGATGGATGTGGATGGTTTAGGAAGAAATATGGGCACCTTAGATGTCTTTGATTTCAACGAGTACGATGACCTCGACGGTGAGATTGAGCAGAGGAAGCACGTTAACGGCAGTGGAGAAAAGCGGTTTCTTGGTTCCATGAACCTGCCTCAACGTGAAATCAAGAGGGAATTTGGAACCACTTCTAGTAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCAGAAAAAACCAATACCTTTGATCGGGATAGGCCTACCAGAAAGATTAACTTCGACACAGATAGTGATGGAGCTTATGTCCCAACACCCTTGTTAAGGGATAAGTTTAGGGGTCATTCTGATGAAGCAATAAGGGTTCAGGGTAAAAATGGAGTTTTAAAGGTCATGGTAAAAAAGAAGAAGAATGTGAGTGAAACTTCGGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGACTCTAAGGACTGAAGATACTCCGAAGAGGAAAGTGTTAGTTGCTCCTTCAGTTTACCCAGAAACTAAACCCCATGTGAAACAGAATCCCTTTCCTAAGCCAGAGAAGGACCATGCTGATTTTCAAACATCAGCATCAACAAAAAATGGAAGGGGTTGCAGTTGGGATTCAGGTGATAGCGGTGTATCATTGAAGCCCAGAAAAAAGGTCGTTGAAGCTCAGAAATCTACCAAGAGGGCAAGCTCTGAAGTTGAAAAAATTCCATGTGAAGAGACTCCCCCAAGTACAGCAAAGGAAGGAAAAGCAAAACGAGGCAGTGGAACTGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTTCTGGCTGGAAAATCGATTACAGACCTAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCAACTGGAACAGCATATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAATGAAGAAGGAGCAGAGGCCAAACCCAGTGCTGATGCTTCCTTTACCCCAATATCAGATGATATTCTCAGTCAATTAACCAGGAAAACTCGAAAGAAAATTGAGAAAGAATGGAAAAGTAAGCAGAGAGATGAAAGTGACAGTGAAAATGCCAAAGAAGCAAGTGCACTGAGATCTGCTGGTACTAAAAATGACGTGGACAGCATGGATAGTGATAGCAACGAAGAAAAATTAAGCTCTTTCATAAAGCAGGGTGGGAAATCTATTAAAAAGAAATTGAACGAGAATGGATTTCCTAGTGTTGACTCAAAAGGTCAAAGTTCTAGTAAGTATTCACGTGATGCCACTGCAAAACCTTCTTCTGGATTCAGTTCACGTATTTTACATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTCGCTCTAGTAAGGGATTAGATTCAGAGAATGATGGTTTTGTTCCATATACTGGTAAAAGGACTCTGCTGTCCTGGCTTATCGATTCTGGGACTGTGCAGTTGAGCCAAAAGGTTCGTTATATGAACCGCAGACAGACCCGAGTGATGCTGGAGGGGTGGATTACCAGAGACGGCATTCATTGTGGTTGCTGCAGCAAAATCCTCACTGTTTCGAAGTTTGAGATACACGCTGGAAGCAAACTTCGGCAACCTTTTCAAAACATCTTTCTGGAATCTGGGATTTCTCTTCTGCAATGCCAGATAGATGCTTGGAACAGACAGGAGGAATCTAAACGTCTCAGTTTCCACACAGTTGAAATTGAAGGTGACGATCCGAATGATGATACTTGTGGCATCTGTGGAGATGGTGGCGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGACATTCAGATTCCTCCGGGTGATTGGCACTGCCCAAATTGTACATGCAAGTACTGTGGAGTTGCTAGTGTTGATACTTCTCATGAAAACACTACCAATGTTCTTGAGATATCTAGTTGCATGTTATGCGAGAAAAAATTTCATGAATCGTGCATCCCGGAGATGGATACTCATTCCAATGGTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGCTTTTTGAGAATTTGCAGAAGTTTCTTGGGGTGAAACATGAATTAGATGCAGGGTTCTCATGGTCTCTTGTCCGTAGAACAAGTGAAGATTCAGATTCATCTCTTCGTGGGCATTCACAAAGAATTGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGTTTTTTGTCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAATATTGGATCAAACTTTTATAGGCTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAGATGCCATTCATTGGGACCCGTCATATATATAGACGTCAAGGAATGTGCCGTCGTCTTTTTTGTGCAATTGAATCTGCTCTTCGCATGCTTAAGGTTGAGAAACTGATTATACCAGCAATTGCCGAGCTCATGCATACATGGAATGTTATTTTTGGCTTTATCCCTTTGGAGCAATCACTCAAGCAAGAAATGAGATTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCGAAGAGACAATTGTTGAGGAAAATGCTACTACTGCCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTCAGTAGTCCTAAGATGGATGCAGAGACCTCATCTGGACAGGAACCTCAAAGTTGTGATGACACTGAACAGCGGCACTCCAAGAAGACAACAAATGAAGCAGCTGACACTAACCCGGATCCTGAATCCATGCCTGGTTCTCCAAATGATACATCTGTGGTGAATAGTTCTCTGGACGCATCTCGTGAAGTTAAAACTTCTTGCTTTCCAATGGAAACTGAAAATTCAGATTCTGATTCTGGTGATAAATTAGCTGAATGTTCCTCCGATGGGAAATGTTCATCTCCCTCCGACCGAATGGGCATCTCTCTTCCAACCAAAAATAGGCCTGGAATTCAGCATGTTTCAGAAGACCATTCGCAGTCCACTTCTCAATGTATGGCAGCTGATACTCCTTCAGACAGTTTGCTTGAACCTAAGGTTACAATTTCAGATGAAGGAATCAGACGTTCGAATTCTCATGCTGGGCACAAGTTGGTTGAATCTGATTCTCAGAAGAAATCTTTCCCTTCTACTTTAGACTATGGCACTGATGAGTTTGAAAACAACATACCCGTGATGGATTCTCCTGAATATGACAAGTGTTTGAATAAGATTAATGGTCATGATTTTCGTGAAGACAATGCCCATGCTATTTCTTTTAAACCTGCTCATTGGGATGAAAATTTTGCTAATGGCGTTGTCGGTGAAAAGCCACTTGTCTCTTCATCTGGTCTGTGTGGCTCTAATGGACGCCCCTCCGAAACTATATCTGATGATGGAATTTGTGGCAGTGAAAATTCTCCACAGACCTGTGGGGAAAAAGTCAGGTGA 3900 42.13 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSASRLLHAKKEKKRPRLVLSDSGSSDEVLLPHRRRVDPETIRVCNGLNSFEKDDMDERGSIRKKDRLQYVKRNDDVLLNRMDVDGLGRNMGTLDVFDFNEYDDLDGEIEQRKHVNGSGEKRFLGSMNLPQREIKREFGTTSSRHALVDKRKNLYAEKTNTFDRDRPTRKINFDTDSDGAYVPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVKKKKNVSETSDMYDHRKLEESRKTLRTEDTPKRKVLVAPSVYPETKPHVKQNPFPKPEKDHADFQTSASTKNGRGCSWDSGDSGVSLKPRKKVVEAQKSTKRASSEVEKIPCEETPPSTAKEGKAKRGSGTEKQKLRERIRGMLLSSGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADASFTPISDDILSQLTRKTRKKIEKEWKSKQRDESDSENAKEASALRSAGTKNDVDSMDSDSNEEKLSSFIKQGGKSIKKKLNENGFPSVDSKGQSSSKYSRDATAKPSSGFSSRILHGRKGRKLGLLVRRSSKGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGISLLQCQIDAWNRQEESKRLSFHTVEIEGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDTSHENTTNVLEISSCMLCEKKFHESCIPEMDTHSNGSVTSFCGKNCRELFENLQKFLGVKHELDAGFSWSLVRRTSEDSDSSLRGHSQRIECNSKLAVALTVMDECFLSIVDRRSGINLIHNVLYNIGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRMLKVEKLIIPAIAELMHTWNVIFGFIPLEQSLKQEMRLMNMLVFPGTDMLQKLLIEETIVEENATTASGAKQTDCRSTEFSSPKMDAETSSGQEPQSCDDTEQRHSKKTTNEAADTNPDPESMPGSPNDTSVVNSSLDASREVKTSCFPMETENSDSDSGDKLAECSSDGKCSSPSDRMGISLPTKNRPGIQHVSEDHSQSTSQCMAADTPSDSLLEPKVTISDEGIRRSNSHAGHKLVESDSQKKSFPSTLDYGTDEFENNIPVMDSPEYDKCLNKINGHDFREDNAHAISFKPAHWDENFANGVVGEKPLVSSSGLCGSNGRPSETISDDGICGSENSPQTCGEKVR 1299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7135406 7143395 - CmoCh08G011200.1 Cmo08g01120 387853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01120 1299 CDD PHD2_CHD_II 708 746 - -
Cmo08g01120 1299 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 529 564 - -
Cmo08g01120 1299 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1191 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 1015 1047 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 490 504 - -
Cmo08g01120 1299 Pfam Tify domain binding domain 630 680 IPR032308 -
Cmo08g01120 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 806 IPR013083 -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 30 61 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 1144 1160 - -
Cmo08g01120 1299 SMART PHD_3 707 747 IPR001965 -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 1015 1206 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 1265 1299 - -
Cmo08g01120 1299 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 256 383 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 536 560 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 1065 1104 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 1048 1064 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 368 383 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 471 517 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 334 358 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 300 314 - -
Cmo08g01120 1299 Pfam PHD-finger 708 749 IPR019787 -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 1172 1193 - -
Cmo08g01120 1299 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Cmo08g01120 1299 PANTHER PHD FINGER FAMILY PROTEIN 1 1191 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 471 489 - -
Cmo08g01120 1299 MobiDBLite consensus disorder prediction 256 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01120 - - - cmo:103489665 2026.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01120 Cmo17g00223 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01120 Cmo-Chr8:7135406 Cmo09g00807 Cmo-Chr9:4133852 2.12E-123 dispersed
Cmo10g01257 Cmo-Chr10:12840563 Cmo08g01120 Cmo-Chr8:7135406 5.96E-47 transposed
Cmo17g00223 Cmo-Chr17:1310846 Cmo08g01120 Cmo-Chr8:7135406 0 wgd
Cmo17g01163 Cmo-Chr17:9392299 Cmo08g01120 Cmo-Chr8:7135406 0 wgd
Cmo08g00335 Cmo-Chr8:2071298 Cmo08g01120 Cmo-Chr8:7135406 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10297 PF16135 TDBD 4.80E-22 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01120 Cmo_Chr08 FPKM 11.584693 13.248562 8.081485 9.386898 6.995216 7.508011 7.415552 25.443253 25.122347 26.717703