Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g01121 | ATGAACGGTGAAACAACCTCTGATTATGTCGAAGTTGATCCCACAGGAAGATATGGAAGATACGATGAAGTTCTTGGCAAAGGAGCTTCGAAGACAGTTTACAGAGCCTTTGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCCGAAGATCTCGAACGGCTATACAGAGAAATCCATTTGTTGAAGACTCTTAAACACAAAAACATAATGAAATTTTGTTCTTCTTGGGTTGACACTGCGAATAGAAACATTAACTTTGTGACAGAGATGTTCACTTCTGGAACTCTTAGACAATACAGGCTGAAGCACAAGAGAGTAAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGGCTTCTTTATCTTCATAGCCATGAGCCTCCTGTAATCCACAGAGATCTTAAATGTGATAATATTTTTGTTAATGGGAATCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTAGCTGCTGTTCTTCGTAAATCCTATGTTGCTCGTTGTGTTGGAACGCCTGAGTTCATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATCTATTCTTTTGGAATGTGCATTCTGGAGATGGTTACTTTTGAATATCCATACAGTGAATGCAGCCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTAAAGGATCTCGAGGTTCGGTGTTTCGTCGAGAAATGCTTGGCTACCGTATCGACTCGGCTTTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGTTATGGTTGTGATTCCTTGCTGAGGCCAATTGATGGAGTTCCTCATGGTCCCTTGGCTAATGGGTATGGGAAGGTTTTGGATTACGGTCCGATCGACGATGAAGTGAGCGAGATCGATCTTTTCTCCGGTCAAGAGGACGAGCATTTGGCAGATGATGATATTACTATCAAAGGGAGAAGGAGAGACGACGACGATATATTTCTACGACTTCGAATTGCAGATAAAGAAGGTCGGATTCGAAACATCTACTTCCCGTTCGATTTGGAGAATGATTGTGCTTTGAGTGTTGCAAATGAGATGGTTTCTGAGCTTGATATCACCGATCAAGATGTGAGGAAGATTGCTGATATGATTGATGGCGAAATTGCTACATTGGTGCCTGAATGGAAGAGGGGAACAAGCTTAGAGGAAGCTCTAGATTGCACTGATTCTAATGTTTGTGCTTTAAATAGTAATCTTTTGGATTATGTTTCGCCTCAAAATCCTGCACACCTGCACATTCTTCAGTGCTCTCAAGAACATGGCTGTGCTTCCATCCATGGCCGTTTTGAAGAGATCACATATCAAGTCGAAGGGTCGGAACAGTTCAATGGAGAAGAGGATTCGAGCGATATCCACTATGCCGATATTTGGGCACAACGAGATGGACCGGAGGTTGTTTCACATGAACATGGAGAACTCAGTTGCAAGGAACGACATGGAATGTCGGAGCAGCCGAAACTTAGAACAGAATCCGAAACGAGAAACTCTAGCTCGTTGAATCATTCGATGTCGTTCACCGACGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAGTATCAAATGCAGTTGAGGGAGCTAAGAGATCGACAGTTAGGAGTCAAAACGAAATCTGTTAGCTTGCACCCGAATCCCAACCTCGCCGAGATCGACATTGGGAAGGACATTGCTTCACATTCCCTCCATGTTGCTGATAACATGTCGGAAAACCAGACCTTTCAAGACGAAAACGTTGTGGACGAGTCGAGTATTCCCGAGCTGATGTTTGCGGGCAAGAGTTTCTATACGGGAGCGTTGGTGCCTCATTCTCTACAAAGGGCAACTTCCCTTCCTGTTGATGCCATTGATTTTTAG | 1968 | 43.19 | MNGETTSDYVEVDPTGRYGRYDEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFCSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAVLRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECSHPAQIYKKVISGKKPDALYKVKDLEVRCFVEKCLATVSTRLSARELLNDPFLQIDGYGCDSLLRPIDGVPHGPLANGYGKVLDYGPIDDEVSEIDLFSGQEDEHLADDDITIKGRRRDDDDIFLRLRIADKEGRIRNIYFPFDLENDCALSVANEMVSELDITDQDVRKIADMIDGEIATLVPEWKRGTSLEEALDCTDSNVCALNSNLLDYVSPQNPAHLHILQCSQEHGCASIHGRFEEITYQVEGSEQFNGEEDSSDIHYADIWAQRDGPEVVSHEHGELSCKERHGMSEQPKLRTESETRNSSSLNHSMSFTDDHENEIRQELRWLKAKYQMQLRELRDRQLGVKTKSVSLHPNPNLAEIDIGKDIASHSLHVADNMSENQTFQDENVVDESSIPELMFAGKSFYTGALVPHSLQRATSLPVDAIDF | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7145129 | 7148452 | - | CmoCh08G011210.1 | Cmo08g01121 | 387854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g01121 | 655 | SMART | serkin_6 | 19 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo08g01121 | 655 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 315 | 610 | - | - | |
Cmo08g01121 | 655 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 5 | 291 | - | - | |
Cmo08g01121 | 655 | Gene3D | Transferase(Phosphotransferase) domain 1 | 102 | 280 | - | - | |
Cmo08g01121 | 655 | ProSiteProfiles | Protein kinase domain profile. | 19 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo08g01121 | 655 | Pfam | Protein kinase domain | 22 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo08g01121 | 655 | Gene3D | - | 345 | 434 | - | - | |
Cmo08g01121 | 655 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 277 | IPR011009 | - | |
Cmo08g01121 | 655 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 347 | 401 | IPR024678 | GO:0004674|GO:0005524 | |
Cmo08g01121 | 655 | MobiDBLite | consensus disorder prediction | 504 | 541 | - | - | |
Cmo08g01121 | 655 | Coils | Coil | 548 | 568 | - | - | |
Cmo08g01121 | 655 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo08g01121 | 655 | CDD | STKc_WNK | 17 | 276 | - | - | |
Cmo08g01121 | 655 | MobiDBLite | consensus disorder prediction | 504 | 524 | - | - | |
Cmo08g01121 | 655 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED | 5 | 291 | - | - | |
Cmo08g01121 | 655 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED | 315 | 610 | - | - | |
Cmo08g01121 | 655 | Gene3D | Phosphorylase Kinase; domain 1 | 3 | 100 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g01121 | Cmo17g00224 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00700 | Cmo-Chr2:4415242 | Cmo08g01121 | Cmo-Chr8:7145129 | 1.37E-167 | dispersed | |
Cmo08g01121 | Cmo-Chr8:7145129 | Cmo12g01126 | Cmo-Chr12:10272669 | 0 | dispersed | |
Cmo17g00224 | Cmo-Chr17:1320289 | Cmo08g01121 | Cmo-Chr8:7145129 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74544 | PF00069 | Pkinase | 1.60E-48 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g01121 | K08867 | - | csv:101210511 | 1057.36 |