Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01121 ATGAACGGTGAAACAACCTCTGATTATGTCGAAGTTGATCCCACAGGAAGATATGGAAGATACGATGAAGTTCTTGGCAAAGGAGCTTCGAAGACAGTTTACAGAGCCTTTGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCCGAAGATCTCGAACGGCTATACAGAGAAATCCATTTGTTGAAGACTCTTAAACACAAAAACATAATGAAATTTTGTTCTTCTTGGGTTGACACTGCGAATAGAAACATTAACTTTGTGACAGAGATGTTCACTTCTGGAACTCTTAGACAATACAGGCTGAAGCACAAGAGAGTAAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGGCTTCTTTATCTTCATAGCCATGAGCCTCCTGTAATCCACAGAGATCTTAAATGTGATAATATTTTTGTTAATGGGAATCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTAGCTGCTGTTCTTCGTAAATCCTATGTTGCTCGTTGTGTTGGAACGCCTGAGTTCATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATCTATTCTTTTGGAATGTGCATTCTGGAGATGGTTACTTTTGAATATCCATACAGTGAATGCAGCCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTAAAGGATCTCGAGGTTCGGTGTTTCGTCGAGAAATGCTTGGCTACCGTATCGACTCGGCTTTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGTTATGGTTGTGATTCCTTGCTGAGGCCAATTGATGGAGTTCCTCATGGTCCCTTGGCTAATGGGTATGGGAAGGTTTTGGATTACGGTCCGATCGACGATGAAGTGAGCGAGATCGATCTTTTCTCCGGTCAAGAGGACGAGCATTTGGCAGATGATGATATTACTATCAAAGGGAGAAGGAGAGACGACGACGATATATTTCTACGACTTCGAATTGCAGATAAAGAAGGTCGGATTCGAAACATCTACTTCCCGTTCGATTTGGAGAATGATTGTGCTTTGAGTGTTGCAAATGAGATGGTTTCTGAGCTTGATATCACCGATCAAGATGTGAGGAAGATTGCTGATATGATTGATGGCGAAATTGCTACATTGGTGCCTGAATGGAAGAGGGGAACAAGCTTAGAGGAAGCTCTAGATTGCACTGATTCTAATGTTTGTGCTTTAAATAGTAATCTTTTGGATTATGTTTCGCCTCAAAATCCTGCACACCTGCACATTCTTCAGTGCTCTCAAGAACATGGCTGTGCTTCCATCCATGGCCGTTTTGAAGAGATCACATATCAAGTCGAAGGGTCGGAACAGTTCAATGGAGAAGAGGATTCGAGCGATATCCACTATGCCGATATTTGGGCACAACGAGATGGACCGGAGGTTGTTTCACATGAACATGGAGAACTCAGTTGCAAGGAACGACATGGAATGTCGGAGCAGCCGAAACTTAGAACAGAATCCGAAACGAGAAACTCTAGCTCGTTGAATCATTCGATGTCGTTCACCGACGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAGTATCAAATGCAGTTGAGGGAGCTAAGAGATCGACAGTTAGGAGTCAAAACGAAATCTGTTAGCTTGCACCCGAATCCCAACCTCGCCGAGATCGACATTGGGAAGGACATTGCTTCACATTCCCTCCATGTTGCTGATAACATGTCGGAAAACCAGACCTTTCAAGACGAAAACGTTGTGGACGAGTCGAGTATTCCCGAGCTGATGTTTGCGGGCAAGAGTTTCTATACGGGAGCGTTGGTGCCTCATTCTCTACAAAGGGCAACTTCCCTTCCTGTTGATGCCATTGATTTTTAG 1968 43.19 MNGETTSDYVEVDPTGRYGRYDEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFCSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAVLRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECSHPAQIYKKVISGKKPDALYKVKDLEVRCFVEKCLATVSTRLSARELLNDPFLQIDGYGCDSLLRPIDGVPHGPLANGYGKVLDYGPIDDEVSEIDLFSGQEDEHLADDDITIKGRRRDDDDIFLRLRIADKEGRIRNIYFPFDLENDCALSVANEMVSELDITDQDVRKIADMIDGEIATLVPEWKRGTSLEEALDCTDSNVCALNSNLLDYVSPQNPAHLHILQCSQEHGCASIHGRFEEITYQVEGSEQFNGEEDSSDIHYADIWAQRDGPEVVSHEHGELSCKERHGMSEQPKLRTESETRNSSSLNHSMSFTDDHENEIRQELRWLKAKYQMQLRELRDRQLGVKTKSVSLHPNPNLAEIDIGKDIASHSLHVADNMSENQTFQDENVVDESSIPELMFAGKSFYTGALVPHSLQRATSLPVDAIDF 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7145129 7148452 - CmoCh08G011210.1 Cmo08g01121 387854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01121 655 SMART serkin_6 19 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01121 655 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 315 610 - -
Cmo08g01121 655 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 291 - -
Cmo08g01121 655 Gene3D Transferase(Phosphotransferase) domain 1 102 280 - -
Cmo08g01121 655 ProSiteProfiles Protein kinase domain profile. 19 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01121 655 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01121 655 Gene3D - 345 434 - -
Cmo08g01121 655 SUPERFAMILY Protein kinase-like (PK-like) 21 277 IPR011009 -
Cmo08g01121 655 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 347 401 IPR024678 GO:0004674|GO:0005524
Cmo08g01121 655 MobiDBLite consensus disorder prediction 504 541 - -
Cmo08g01121 655 Coils Coil 548 568 - -
Cmo08g01121 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Cmo08g01121 655 CDD STKc_WNK 17 276 - -
Cmo08g01121 655 MobiDBLite consensus disorder prediction 504 524 - -
Cmo08g01121 655 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 5 291 - -
Cmo08g01121 655 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 315 610 - -
Cmo08g01121 655 Gene3D Phosphorylase Kinase; domain 1 3 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01121 Cmo17g00224 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00700 Cmo-Chr2:4415242 Cmo08g01121 Cmo-Chr8:7145129 1.37E-167 dispersed
Cmo08g01121 Cmo-Chr8:7145129 Cmo12g01126 Cmo-Chr12:10272669 0 dispersed
Cmo17g00224 Cmo-Chr17:1320289 Cmo08g01121 Cmo-Chr8:7145129 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74544 PF00069 Pkinase 1.60E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01121 K08867 - csv:101210511 1057.36