Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01123 ATGGATACTTCCTTCGACTGCCTCATTTTCGACTTGGATGACACTCTGTACCCATTCAACACTGGAATTTCAGCTGCTTGCAAGGAAAACATCGAAGATTTTCTTGTCGAAAAATGTGGATTCCCAGTTACCCAAGCTCCAATTCTTCGTACTGAGCTTTTCAAAACCTACGGCAGCACTCTGGCTGGTTTGCGAGCATTGGGTTATGACATCCACGAAGATGATTACCATGGCTTCGTCCATGGAAGATTGCCATACGACCGGCTGAAACAGGACATCCATCTCCGGCATCTCTTGCTGTCAATTCCTCAACGAAAAATCATTTTCACGAACTCCGACATGAACCACGCGACAGAGGTGCTCGGTCGCCTTGGCTTACAGAGTTGTTTCGAGAAGATCATATGTTTCGAGACGATGAACCCGAACCTGCCGAAGGCGACCCGACCCGACGAGTTTCCGGTTCTTCTCAAACCGTCGATGGACGCCATGAGAATTGCTATCGACGTCGCCGACGTTGACCCCCGTCGTACGCTGTTTCTTGACGATAACGCCCACAATATCGCCGCCGGAAAAGCCGCCGGCCTCCGCACCGTTCTCGTGAGAACTTTACTTCACCACTTATTTACGTGGTGTCATTGGATGAAGGTGGGGAAGCTCGTGAAGAATATTGAGGCAGATTATGCTGTGGAAACGGTACATAATTTGGCACAAGAAATTCCGGAGATATGGGTAAATGCAAAATTAGATAATGACGATGAAATGATCCATCAGAATCGAAACGATGTTGATTCCATTCTCATGGAAACAGCTATCAGTGCTTAA 822 47.57 MDTSFDCLIFDLDDTLYPFNTGISAACKENIEDFLVEKCGFPVTQAPILRTELFKTYGSTLAGLRALGYDIHEDDYHGFVHGRLPYDRLKQDIHLRHLLLSIPQRKIIFTNSDMNHATEVLGRLGLQSCFEKIICFETMNPNLPKATRPDEFPVLLKPSMDAMRIAIDVADVDPRRTLFLDDNAHNIAAGKAAGLRTVLVRTLLHHLFTWCHWMKVGKLVKNIEADYAVETVHNLAQEIPEIWVNAKLDNDDEMIHQNRNDVDSILMETAISA 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7161906 7163483 + CmoCh08G011230.1 Cmo08g01123 387856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01123 273 Pfam Haloacid dehalogenase-like hydrolase 8 200 IPR041492 -
Cmo08g01123 273 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 154 200 IPR006439 -
Cmo08g01123 273 SFLD C1.5.3: 5'-Nucleotidase Like 3 243 IPR010237 -
Cmo08g01123 273 Gene3D - 95 250 IPR023214 -
Cmo08g01123 273 Gene3D - 2 89 - -
Cmo08g01123 273 SUPERFAMILY HAD-like 5 240 IPR036412 -
Cmo08g01123 273 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 3 200 - -
Cmo08g01123 273 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 215 269 - -
Cmo08g01123 273 PANTHER HYDROLASE, SUBFAMILY IA, VARIANT 3, PUTATIVE-RELATED 3 200 - -
Cmo08g01123 273 PANTHER HYDROLASE, SUBFAMILY IA, VARIANT 3, PUTATIVE-RELATED 215 269 - -
Cmo08g01123 273 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 3 243 - -
Cmo08g01123 273 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 6 200 IPR010237 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01123 K07025 K07025; putative hydrolase of the HAD superfamily - csv:101214793 421.779
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01123 Cmo17g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01123 Cmo-Chr8:7161906 Cmo13g00113 Cmo-Chr13:639971 9.01E-74 dispersed
Cmo17g00228 Cmo-Chr17:1343928 Cmo08g01123 Cmo-Chr8:7161906 6.58E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g478 . . Bda03g00891 . Bpe04g00835 . Bma04g00789 . Cmo08g01123 Cmo17g00228 . . . . . . . . . . . . . . Cla06g00575 Cam06g0614 Cec06g0615 Cco06g0621 Clacu06g0601 Cmu06g0594 Cre06g1362 Cone14ag0844 . . . . . . . . . . . . . . . . . . . Cma17g00241 Car08g01029 Car17g00218 Cpe12g00202 Cpe17g00144 Bhi12g01720 . . . . . . . . . . . . . Lsi09g01328 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003737 1 2 0 1 1 2 2 2 2 1 2 2 1 1 1 2 2 1 2 2 1 1 1 1 1 2 1 6 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01123 Cmo_Chr08 FPKM 0.0 0.0 0.610846 0.77789 1.406809 1.671826 1.469458 3.802603 4.114621 3.269878