Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01126 ATGGATAGGAATAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCATCCAACGGCCTATCTAGACGGAGATACAGGAGTAGTAGTCTTCGTGACTCTCCAGAGGATGATGGACCGCTCGAGTTGCAGGATACGGTGAGATTGAGAGATCGAGGAAGCGGGAAGAAAGATCGAGATCGAGACAGGGATAGAGATCGGCTTAGCAGGAGCAAGAGGAGGAGAGCTGATAGATTGATTCATGGCGGTAACAATAGGGAAGATGGAGGGGAAGATAGTTCTGAGGAGAGTGTAAATGACGAAGAGGACGATGAAGACGACGATGGCGGTGGTGCTGGTGGAGCTTCCGTCAGAATGCTTCCTCCGAATCCGGCGACAAATTTGAACCATCGGAAAAGTTATCCACCGGCGAAGAGTTTTAGAGCAGCACCGCCGTGGAAACCCGCGGATGAGATGATTGGTGTGTCGGTACCGAGAAAAGCCCGTTCAGCCTCCACGAAGCGGTCTCATGAATGTTGGCCAGCAGCGGCAGGCGGCGGAATGGTTACAGAGGCCATTCACCGGCAGGCTTCGACATCGCCAGTGAGGCCACCAAGTCTTACAGCAATGGCGACGCTTCTTCAGCCGCCTGCCTCGCCGTCTTCTTCCAATGCTTCGGTGAGGAAGAAGCTGAAGCAAGCCGGGCCTAAACTCCGGCCGCCCAAATCCTCCTCAAAGCCGTCTTCCATGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTCTTGTACGGCATGATGAGACAGCCGCAAGCCCCTCCAAAACAAGAAGCCGATTCCGTGAAGTTCGATCCCAAATCCGCCATGGATGCCAAATCCAGAGTTTCATCGCCCATTTCTAACCCCTCTTCTGTTTTGCCTCAGAATTCCAGCTCCTCTGTCACTCCGATATCAGCCACTGCACCCAAGAGGAAGCGACCGCGTCCTGTGAAGTACGATGACGAGAACATGGTGGCTTTCAATCTTCGGAATAGCCCCGTTTCGTCGACAGCCAAGCCTGAAGCAGCCGATCAACCGACCAACACCGATATCCCTTCAACAAATGTGGATAAAGTTTCTGGATCTGCTGGTGAAAATGGAGTTGTTTCAAACGAATCTGGAAATTCCCAGGCCTTACCAGCAACTTCTGAGTCCCATCCAGAAGCCCTGAAGGTGAATACAGCCAGTGTCATGTCCAATTCCAAGCCATTGACTGAAGAATCAGAAGGCAAAGTTTTGGGTACAAATAAGGAAGAACCCCAATCGCCCCTGAAGGAATCAAACGGCCATAGATTGGAAGACAAGCGAGAGGATATGACAGCGACCAAATCGTCCACCTTCGACGTAGATAACCAGCGGGATGATAAATACAAGATAGATCTGATGGCTCCTCCACTACGAGCTTCACCAGAAAGGGATGGAGAGATTGATTTTGTGGCCGTAGATGCTAAACCAATGGTCATAGATGTGGACACGGAAATGAAACCTCTGATAAAGGAAGAAGACAAAGGAACAACCAGACTTGGGACTAAAGAAGTTGTGAACGTGGAGTCCAAAGCAATTGCAGCTGAGGAAGGTGATGATTCAAAGAAGCCCATTGTTTGCAAAGATGGAAAGGTTGACCTTCAACTTGATTTAGAGAAAACAACTGGCAGAGATTGTACCACTGCAAATGTTGTGGACGCCAACAAGTTCCCCCAGTATGTTCTGAAACATCCGCCGCCGCAACTGGGGTCCGAGAAGGCTGGATCTGGTGCTTCTCAAGCGAGCTCCCTTCCTTTGCCCATGTCTCTACCTGGCTGGCCAAGTGGGTTGCCTCCTATGGGATATGTGGCTCCTCTGCCCGGAGTTGTGTCGGTGGATGGTAGCGCGTTGCCTACAGCAGCCATGCAGCCGCCAAATTTGCTTTTCCATCAACCCCGGCTGAAGAGGTGTGCGACGCATTTCTACATTGCTCGGAATATATTGTATCATCAGCAAATTGCGAGGATGAATCCATTCTGGCCGGCAGCAGCAGGTTCGGCTTCCTTGTTTGGGCCCAAGCATGGTAATCTCAGCATTGTGCCCTCTGCAGATGTGCAAGGAAATCTACCGAAAAACGGGAAAAATGCAATGCTGGATAAGGGCCAGAGTCTCGGAATGTTTTCGGGTCATGCTGGGAAGGATAGGGGCTCTCAGGCTGTTAATGTTGGTGATGGTGCTCAGAGAAGGCAAATTTTGCTTCAACAAGCTCTACCACCGGGAGCGCCTAGTAATATCCTGCATGGCCCTGCTTTTATTCTGCCTTTGAGTCAGCAGCAGCAGGCAGCTGTAGCCACTTCTGTCCGGCCTGTTTCTGTCAAGTCTCCTCCTCCTAGTGGGAATGCCAATGGCAGTGTGGTTTCAAATTCTTCCTCTGTTAGTACCTCAGCTGTGGCAGCCATTGCCGCACCTGCAATGAGTTTCAACTATTCGGGCGTGCCTGGCAATGAACCACAATATTTAGCCATTTTGCAGAACAATGGATATACATACCCAATTCCAGCGCACGTCGGTGCACCGCCGCCATATAGAGGAACCCACACTCATTCTATGCCCTTCTTCAATGGGTCGTTTTATTCTTCCCAAATGCTTCATCCTTCGCAGCTTCAGCAGCAGCAACCACCTCCTCAGTCTCACCCTCATCAACAGGGCCTTCAGAATGCTAATGCTGCTGCTGCTGCTGCCGCCAATGGTTCCTCGTCGTCTCAAAAGAACCTATCGAATCAGCAGCAGAGGCCACATGGGAGCACTGTCAGTGGGAACTTTCAAGGCTTTCCTGCCTCAAGAAATCAGCCATCTCATTCACAGCAGCAGAATCATGCCTCTCATCAAACTAGGCCACTCGAGTCTGAGATTGGTGGTGAAGATAGCCCGTCGACTGCTGATAGTCGAATGAATCTTGCCAATCTGAGTGTCTATGGTCCAAATTTTCCAATGCCAATGCATACTCCTAATTTTGCTTTGATGACTCCTGCTTCAATGGCGGCTGCAGGTGGTGGGGCACCAAATGACAAGAAACAGCAGCCACAACAACAGCCGCAGGGTTCTAAAGGTCTGGAACCATCTCAAACTATTGCTTTGTCCTTTGCTCCTCCCAATGGGGCACCATCTGCTCCCGGCCTCGACCTTTCATCCATATCACCAAATCATCCTATATTTCAAAGTATTCCTGAGATCACCAGGCAAGGGTATCAACACATTATGGCTGCAGCTGCAGCTGCACAGGCTGCTCAGCAGAAAAAGATTTATCGTGTAGCCGAAGAAGGAAAAACCGTGCATACATCTGCTGCAGAGGATGAGAGGAAGAACATGTCTGTGAAGACTTCTCCAACTGTTGGACAGTCCATTGCCTTCTCTAGACCTGATTTAGCCGAGTCCACAATTCCGGCTGGGGCTGCTGTTGTTGACAGCTCTGCAAGAACTCTTAGAACTTCAGGTTCCGTTATGCCATCTGCAATGGGCACTGTAAATATGTGTGGTTCTCAGCATCCACTGCAGCGAAGTCAGCAGCAGCAGCAACAACAACAACAGATGATTCAGCTTCAAAAGCAACAGCAATATGCAGCTGCAGTGGCAAGGACTAAAACATCGGCGACAAGTAATGGCAATGTCTATGCTGAGCACCCTCCTACATCCATGGCTGCCAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCAAAGTAACAGCAACAGTCCTGCTCAGTCTCCTCAGTGGAAGAATTCTGTAAGAACCACCACCTCTTCTCAAGTTCCAACCCCCTCTCTGTCTTCATCAAATACATCATCCATCAAAAATCTTCCCCAACAGCAGGGCCGTCCGCAGCAAAACCACTCTCAGATCTCTTTTGCAGCTAACCAAAAATCTACCACACAATCACAAGGGCAGCAACCTGCTAGCAGTAATCAGTCACCATCTCCTGGAATGATCGGTTCGCCAACCAATTCTTCGATGTCAAAGGGTGCCGGCGGAAGCCCGCGGACAGCTACTTCCAGTTCCATGGGCCATAAAGTTGGTCAATCTTCTTCTTTATCATCACAGCAGACGAAGAATCCTACATCTATGCCCCCACAGAAGTCATCTCCTGTTGGTGGGAGAAATGTTACGTCAATTCTTGGCAATAACCAAGTGGCCTCTTCAAATTCTGGAACTAAATTATCCCAACATCCACAGTCACAACAGCAACAGCAACAGCAACATTTGGCGAAGCAAACATTGCAGCAAGCTCAGCTGCTCTTCCCTTACATGCAGGCTCAATTTCCCCATTCAAGTAGCACTGCCACTGCTTCGCCTTCACATTCAAGACGTCGTCCAGAGCAGCAAGCCCAGGGCTCGGGAGGAACATCCTCCAATGGAATGCTATCTCTTGTCCACCCTGTTACAATCGGAGGCACCACCACTACTGATCCTGCCAAGGCTGTTGCTGCTGCAGCAGCAGCTGCAGCTAATGCAGCTAATATGAAAGCTGTTGGTGGCTTACCTACACAAGCTATTCTCCATCCTGCTCAGTTTGCTACTACACAGTCCTCTGGTAATCCTCATCAGCTTGTACCTGCAGGTTTTCCTTACGTGCATACTGCTGCAGTGCAAGTGAAATCAACAGAGCAAAAACAACCTGCGGAAATGCAAGTTCAAATAGCTAAGCAGCAGCAATCTGAATGCTCGTCGGACTTCGTACCCCACGATTTTGGGAAAGCTGTGAGAGGAAGTGGGAAAATAGTCCTCCATCTGAGAATGCTTCAGGTCTAG 4794 49.77 MDRNREARRTTTNMAASNGLSRRRYRSSSLRDSPEDDGPLELQDTVRLRDRGSGKKDRDRDRDRDRLSRSKRRRADRLIHGGNNREDGGEDSSEESVNDEEDDEDDDGGGAGGASVRMLPPNPATNLNHRKSYPPAKSFRAAPPWKPADEMIGVSVPRKARSASTKRSHECWPAAAGGGMVTEAIHRQASTSPVRPPSLTAMATLLQPPASPSSSNASVRKKLKQAGPKLRPPKSSSKPSSMAQDEIEIEIAEVLYGMMRQPQAPPKQEADSVKFDPKSAMDAKSRVSSPISNPSSVLPQNSSSSVTPISATAPKRKRPRPVKYDDENMVAFNLRNSPVSSTAKPEAADQPTNTDIPSTNVDKVSGSAGENGVVSNESGNSQALPATSESHPEALKVNTASVMSNSKPLTEESEGKVLGTNKEEPQSPLKESNGHRLEDKREDMTATKSSTFDVDNQRDDKYKIDLMAPPLRASPERDGEIDFVAVDAKPMVIDVDTEMKPLIKEEDKGTTRLGTKEVVNVESKAIAAEEGDDSKKPIVCKDGKVDLQLDLEKTTGRDCTTANVVDANKFPQYVLKHPPPQLGSEKAGSGASQASSLPLPMSLPGWPSGLPPMGYVAPLPGVVSVDGSALPTAAMQPPNLLFHQPRLKRCATHFYIARNILYHQQIARMNPFWPAAAGSASLFGPKHGNLSIVPSADVQGNLPKNGKNAMLDKGQSLGMFSGHAGKDRGSQAVNVGDGAQRRQILLQQALPPGAPSNILHGPAFILPLSQQQQAAVATSVRPVSVKSPPPSGNANGSVVSNSSSVSTSAVAAIAAPAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPPYRGTHTHSMPFFNGSFYSSQMLHPSQLQQQQPPPQSHPHQQGLQNANAAAAAAANGSSSSQKNLSNQQQRPHGSTVSGNFQGFPASRNQPSHSQQQNHASHQTRPLESEIGGEDSPSTADSRMNLANLSVYGPNFPMPMHTPNFALMTPASMAAAGGGAPNDKKQQPQQQPQGSKGLEPSQTIALSFAPPNGAPSAPGLDLSSISPNHPIFQSIPEITRQGYQHIMAAAAAAQAAQQKKIYRVAEEGKTVHTSAAEDERKNMSVKTSPTVGQSIAFSRPDLAESTIPAGAAVVDSSARTLRTSGSVMPSAMGTVNMCGSQHPLQRSQQQQQQQQQMIQLQKQQQYAAAVARTKTSATSNGNVYAEHPPTSMAAKFPNALSSFSQNLVQSNSNSPAQSPQWKNSVRTTTSSQVPTPSLSSSNTSSIKNLPQQQGRPQQNHSQISFAANQKSTTQSQGQQPASSNQSPSPGMIGSPTNSSMSKGAGGSPRTATSSSMGHKVGQSSSLSSQQTKNPTSMPPQKSSPVGGRNVTSILGNNQVASSNSGTKLSQHPQSQQQQQQQHLAKQTLQQAQLLFPYMQAQFPHSSSTATASPSHSRRRPEQQAQGSGGTSSNGMLSLVHPVTIGGTTTTDPAKAVAAAAAAAANAANMKAVGGLPTQAILHPAQFATTQSSGNPHQLVPAGFPYVHTAAVQVKSTEQKQPAEMQVQIAKQQQSECSSDFVPHDFGKAVRGSGKIVLHLRMLQV 1597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7181023 7187228 - CmoCh08G011260.1 Cmo08g01126 387859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 25 91 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1204 1219 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 285 311 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 204 246 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 258 456 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1240 1418 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1170 1189 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 204 221 - -
Cmo08g01126 1597 Coils Coil 1177 1197 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1 147 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 92 109 - -
Cmo08g01126 1597 PANTHER PROTEIN TIME FOR COFFEE 1 1553 IPR039317 GO:0042752
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1006 1058 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 428 456 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1204 1223 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1435 1471 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 876 975 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 333 411 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 10 24 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 1016 1042 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 779 801 - -
Cmo08g01126 1597 MobiDBLite consensus disorder prediction 876 958 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01126 - - - csv:101215514 2091.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01126 Cmo17g00232 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00232 Cmo-Chr17:1364458 Cmo08g01126 Cmo-Chr8:7181023 0 wgd
Cmo17g01152 Cmo-Chr17:9351858 Cmo08g01126 Cmo-Chr8:7181023 5.07E-84 wgd
Cmo08g00345 Cmo-Chr8:2123138 Cmo08g01126 Cmo-Chr8:7181023 5.24E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01126 Cmo_Chr08 FPKM 0.277597 0.711039 3.889702 2.689204 16.295929 13.117982 16.10224 0.0 0.195339 0.0