Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01131 ATGGCGATTTCTTCGTCCGCCATGGCTCTTTTCCTCTTCCTTCTCCTGTGCTTCTCCTTCTTTTCGCTGTCTCATTCCCTCAGAGGCTTTTTTATCGATTGCGGCTCCACTTCTCCGACCACTCACGGTGGCCGCACCTGGCAATCCGATGACGGCTTCGTCTTTAGTGGAATCAACAAGAATGTCACCGGTCCCGTTCTTGACCCTACGCTTTCCACTGTGCGCTCCTTTCCTAGGGTTCTTAATCGTAAATTCTGCTATGTTGTTCGACCGGTTTTTCGTACCCGGAGGTATATGGTTAGAACGACTTACTACTATGGCGGAGTCAACGGCCTTGATTCGCCGCCGGTTTTCGATCAGATTGTTGATGGGACTGTTTGGAGCATAGTGAATACTACCGAGGATTATGCTCTGGGATTGACGTCCTATTACGAGGGGATTTTTGAAGCGAAGGCGAGAACGATGACTGTGTGCATTGGTTCCAATATGTATACGGATTCGGACCCTTTTCTTTCTGCCTTGGAGGTTGTGACCTTGGAGAATTCTCTTTACAATACGACGGATTTCAACAACTACGGCTTGCGCTTGGTTGCTAGGCATAGTTTTGGGTACAACGGATCCAACTTACGGCATCCAGACGATCAATTTGATCGATTTTGGCAACCATTTGGGAATAGCAGTGGGAACGTAACCAGTAGAACTGTATCTGCCTCTGGTATATGGAATCTCCCTCCATCAAAGATATTTGAAACAGAGCTGAAGACTGATAAGCTGGAACCATTGGAGCTGAACTGGCCTCCTATTTCTCTTCCAGGACCAGAAAGCAATTTCACTTATTACATTGCGCTGTACTTTGCTAATGATCATGCTTCATCATCCGATAATTTGAGAGTGTTTAACATAAGTGTGAATGGTATAAAATATTACGGCGATCTAAACGCATCTTCAGCCGGTCATGTCGTTTTTGCTAGTCAGTGGCCTCTTCATGGTCTAACAAATATTACGTTGACTCCCTCTCCTCTGTCAAAACTTGGTCCATTGATCAACGGTGGGGAACTTTTTCACCTTGTGTCTCTTGGAGAAAGAACTCATGCAAAAGATGTTGTAACCATCATAACATTCGCTAGTTTTCTGATCATAGTTGTCAATCTGGAGAGAGTAAAAGAAAGTCTGAAAAATCCACCACCTGATTGGAATGGCGATCCATGCTTCCCCCATGAATACCGCTGGACAGGAATTACATGTTCTGGTGGCTCTCGAAATCGTGTGGTTACCTTAAACCTTACAAATATGGACCTTTCAGGATCCTTATCACCAAGCATTGCCAATCTTACTGCGTTGTCGGGAATCTGGCTTGGAAACAACAGCTTGTCTGGAACGATTCCTGATCTCAGTCCTCTGAAGTTGTTGGAAATAGTGCATTTGCAAGATAATAATTTCAGTGGAGAGATTCCATTGTCACTTGGAAACATACCACGCTTGCGGGAACTGTTCTTATACAACAATAATTTGGCCGGTGAAGTTCCTCAAAGTCTTCTTAATAAACAACTGAATCTAAGATGTGCAGATACAGCTTCTGCACCACTGCTTCGGAATTCATACATGGTGGGGGTACCATTGAGCGATGAAAGTTATGCAGTCTCCCAAATAATTTCTTGCAAAAAGCAATTCAGGTTCGATTCTGAAGACTGCTATTGTATTGGACCCACTGATCCGAGGCTGCTGCATCCGGCATGTGACATCAAACTGTTCACTGTCAAATTTTGCTATTCAAGAGGACAAAAGATGAAGTGTAGCACTAAAAAGGTATGTGGAAGCAAAAAAGCATAA 1830 44.1 MAISSSAMALFLFLLLCFSFFSLSHSLRGFFIDCGSTSPTTHGGRTWQSDDGFVFSGINKNVTGPVLDPTLSTVRSFPRVLNRKFCYVVRPVFRTRRYMVRTTYYYGGVNGLDSPPVFDQIVDGTVWSIVNTTEDYALGLTSYYEGIFEAKARTMTVCIGSNMYTDSDPFLSALEVVTLENSLYNTTDFNNYGLRLVARHSFGYNGSNLRHPDDQFDRFWQPFGNSSGNVTSRTVSASGIWNLPPSKIFETELKTDKLEPLELNWPPISLPGPESNFTYYIALYFANDHASSSDNLRVFNISVNGIKYYGDLNASSAGHVVFASQWPLHGLTNITLTPSPLSKLGPLINGGELFHLVSLGERTHAKDVVTIITFASFLIIVVNLERVKESLKNPPPDWNGDPCFPHEYRWTGITCSGGSRNRVVTLNLTNMDLSGSLSPSIANLTALSGIWLGNNSLSGTIPDLSPLKLLEIVHLQDNNFSGEIPLSLGNIPRLRELFLYNNNLAGEVPQSLLNKQLNLRCADTASAPLLRNSYMVGVPLSDESYAVSQIISCKKQFRFDSEDCYCIGPTDPRLLHPACDIKLFTVKFCYSRGQKMKCSTKKVCGSKKA 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7224396 7229304 - CmoCh08G011310.1 Cmo08g01131 387864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01131 609 PANTHER OS07G0107800 PROTEIN-RELATED 14 514 - -
Cmo08g01131 609 SUPERFAMILY L domain-like 402 519 - -
Cmo08g01131 609 PANTHER BNAANNG03040D PROTEIN 14 514 - -
Cmo08g01131 609 Gene3D Ribonuclease Inhibitor 382 566 IPR032675 -
Cmo08g01131 609 Gene3D - 203 351 - -
Cmo08g01131 609 Pfam Malectin-like domain 32 355 IPR024788 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01131 - - - cmax:111494330 971.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01131 Cmo-Chr8:7224396 Cmo04g01903 Cmo-Chr4:9700720 3.70E-47 dispersed
Cmo13g00651 Cmo-Chr13:6897393 Cmo08g01131 Cmo-Chr8:7224396 9.35E-32 dispersed
Cmo18g00365 Cmo-Chr18:2381938 Cmo08g01131 Cmo-Chr8:7224396 3.40E-34 dispersed
Cmo04g00255 Cmo-Chr4:1270098 Cmo08g01131 Cmo-Chr8:7224396 5.75E-21 transposed
Cmo19g00625 Cmo-Chr19:6844134 Cmo08g01131 Cmo-Chr8:7224396 2.40E-144 transposed
Cmo17g00240 Cmo-Chr17:1417975 Cmo08g01131 Cmo-Chr8:7224396 5.60E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g465 . . . . . Bpe14g01176 . . Cmo08g01131 . . . . . . . . . . . . . . . Cla06g00563 Cam06g0603 Cec06g0603 Cco06g0608 Clacu06g0589 Cmu06g0584 Cre06g1350 . . Cone7ag0236 Cone4ag0226 . . . . Blo02g00551 . . Bda13g00134 . . . . . . . Cma08g01159 . Car08g01036 . . Cpe17g00137 Bhi12g01823 . . . Hepe03g0115 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008562 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01131 Cmo_Chr08 FPKM 27.67671 27.838579 31.327663 29.814323 26.986004 27.317636 28.677221 53.742023 55.700195 55.215771