Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01133 ATGACGATGGAGATACCAGGGCGCATTGTCGCTGTTCTTCTCCTTATGCTGCTTCTCCTCCTCCTCCTCCTATTCATCCTCCTCGTTGCCTGCAAACCATGGCGCTTCTTTTCCTATTCCCTTTCTCGCACCATCAAGGTTCATGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGTTGTCACTCAAAACCAAATCAATGAACTTCCGAGAGATTATGATTTGGAGGGCGCACTTCAAACTGATGGGCATTTTCGGTCCCCAAGTTTACACGGATTGATCCACAAGCAAAGACTACCTGCTGCGTCTCCCCATTTATGTCAGGGTGATAGATTGGTTCCAGATGTAGTTGCTGATCCTTTAGACGATATTTCTGTTGGTCAAACACTTAAACGTTCATATTTCACAAGCCAGATTCCAGAAGTTCGAAAGCATGCGAAACCAAGCATAGGAAGTGATCAACCCCACGAGTCTGCAAGTCAAGTTATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTTACCTCCGGTCCTTCTCGTGGAGTGCGCTATTCCATACATTCTGCGGACACATCTAGGCTCCAGTTGACCCTTGGAAGAGCACCTCCTAGTGATATACAGCTAAAGGATTCAGAAGTTTCAGGGAAGCATGCCTCAATAAAATGGAATCTAAATAGTATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCAATCAGCAATCCCGATTCTGGAATTAGACAGTTGAGTGACCCAGTTGAGCTTGCTAGTGGAGATGTTATAACTCTTGGTACAAGCTCCACTGTGTATGTTCAAATTACATCTGAGATTGAGAGCCATATTCCTTTTGGAGTTGGGATGGCTTCAGATCCAATGGCGTTACGTCGAGGTGGAAAGAAATTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTCCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGCGATGGACATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGGAGAAGGTCGCCACAATTCTATCTGATCCACTAAAGAGGGAGAGGGTAGTATCTCTTTGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTGGTATGGGCTGATAATGACGATAATTACTTCGTGCAGTGTGCGAATGTCGGGGACTCTGCTTGTGTTATGAATGTTCATGGGAAGCTTTTAAGGATGACAGAAGACCACAGGATAACTAGCTATTCAGAAAGACTCCGACTAGAACAAGCAGGAGAACCATTGAAAGATGGGGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGATAAGTTTCTTAAACAACAAGACCATCGCTTCAGTTCAGAACCTTATATTAGCGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCGGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGTGTGAAGAAGGCAATTCAGCTGGTCCTTCAGGCTAGGGAAAGATACTCCACAGGTGCAGAAAAGTCGGCCGAAAAGATGGCCAATTTTTTGTTGGGCGAGGCTAGAACACTGCGTACAAAAGATAACACTTCTATTATTTTCTTAGATTTTGACGTTCCTCATAGAATCACTTGTAAAGTTGAACCATGA 1731 44.66 MTMEIPGRIVAVLLLMLLLLLLLLFILLVACKPWRFFSYSLSRTIKVHDLERPLVSDAAVVTQNQINELPRDYDLEGALQTDGHFRSPSLHGLIHKQRLPAASPHLCQGDRLVPDVVADPLDDISVGQTLKRSYFTSQIPEVRKHAKPSIGSDQPHESASQVISHGRSYLTLEVTSGPSRGVRYSIHSADTSRLQLTLGRAPPSDIQLKDSEVSGKHASIKWNLNSMKWELVDLGSLNGTLLNSQPISNPDSGIRQLSDPVELASGDVITLGTSSTVYVQITSEIESHIPFGVGMASDPMALRRGGKKFAMEDVCYYQWPLPGVDQFGLFGICDGHSGVGAAKSASEILPEKVATILSDPLKRERVVSLCDASDVLREAFSQTEACMNHYYEGCTATVLLVWADNDDNYFVQCANVGDSACVMNVHGKLLRMTEDHRITSYSERLRLEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAIQLVLQARERYSTGAEKSAEKMANFLLGEARTLRTKDNTSIIFLDFDVPHRITCKVEP 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7240122 7245540 - CmoCh08G011330.1 Cmo08g01133 387866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01133 576 Pfam FHA domain 197 272 IPR000253 GO:0005515
Cmo08g01133 576 PANTHER PROTEIN PHOSPHATASE 2C 38 575 IPR015655 GO:0004722|GO:0006470
Cmo08g01133 576 Pfam Protein phosphatase 2C 303 557 IPR001932 -
Cmo08g01133 576 SUPERFAMILY SMAD/FHA domain 169 279 IPR008984 GO:0005515
Cmo08g01133 576 Gene3D - 300 569 IPR036457 -
Cmo08g01133 576 PANTHER PROTEIN PHOSPHATASE 2C 70 38 575 - -
Cmo08g01133 576 SMART PP2C_4 286 562 IPR001932 -
Cmo08g01133 576 SUPERFAMILY PP2C-like 305 565 IPR036457 -
Cmo08g01133 576 SMART FHA_2 195 247 IPR000253 GO:0005515
Cmo08g01133 576 CDD FHA 170 278 IPR000253 GO:0005515
Cmo08g01133 576 ProSiteProfiles Forkhead-associated (FHA) domain profile. 196 247 IPR000253 GO:0005515
Cmo08g01133 576 ProSiteProfiles PPM-type phosphatase domain profile. 292 564 IPR001932 -
Cmo08g01133 576 CDD PP2Cc 304 564 IPR001932 -
Cmo08g01133 576 Gene3D - 164 299 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01133 Cmo17g00242 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01133 Cmo-Chr8:7240122 Cmo01g01732 Cmo-Chr1:12942300 4.67E-19 dispersed
Cmo14g01825 Cmo-Chr14:13907223 Cmo08g01133 Cmo-Chr8:7240122 4.84E-06 dispersed
Cmo17g00242 Cmo-Chr17:1429561 Cmo08g01133 Cmo-Chr8:7240122 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01133 K01090 - csv:101217195 949.118