Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01140 ATGGAAATGGATCAAGCTGATTTGAGTGTTCGATTATCTGCGCTTTGGAATATCATTGGTGCAAGAAGAAGCCTAAAAGACGACGGAATTCCTTGCCAAATTGAAGAGGGTGTGTTCTTAGGTTCTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACCATTGCTTGTTCCATGCCACCTGCTAATCCAAATGATTTCGTATATAAAGTAGTTGGAGTCGTGGACACTAGAGATGCCGATATTAAGCAGCACTTCGATGATTGTTTCAACTTTATTGAGGAAGGAAGACAATCTGGAGGGGTCTTGATTCATTGCTTTGCTGGAGTATCCAGAAGTGTAACCATTACACTTGCCTATCTGATGAAAAAACGTGGTATGAATCTAACTGAAGCATTGGAACATGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTCGGTTTCATGGTTCAACTCAAGGAATTCGAAACAACTCTTCAAGCTAGCAAAGAGGATGGGATGAAATTGTCAAATGTTTGA 546 40.66 MEMDQADLSVRLSALWNIIGARRSLKDDGIPCQIEEGVFLGSIGAAHNKDELKKLNITHILTIACSMPPANPNDFVYKVVGVVDTRDADIKQHFDDCFNFIEEGRQSGGVLIHCFAGVSRSVTITLAYLMKKRGMNLTEALEHVKSRRPQASPNVGFMVQLKEFETTLQASKEDGMKLSNV 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7275567 7279193 + CmoCh08G011400.1 Cmo08g01140 387873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01140 181 SMART dsp_5 30 167 IPR020422 GO:0006470|GO:0008138
Cmo08g01140 181 Pfam Dual specificity phosphatase, catalytic domain 38 166 IPR000340 GO:0008138|GO:0016311
Cmo08g01140 181 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 27 170 IPR029021 -
Cmo08g01140 181 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 170 IPR020422 GO:0006470|GO:0008138
Cmo08g01140 181 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 19 172 - -
Cmo08g01140 181 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 19 172 - -
Cmo08g01140 181 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 149 IPR000387 GO:0016311|GO:0016791
Cmo08g01140 181 CDD DSP 31 163 - -
Cmo08g01140 181 Gene3D Protein tyrosine phosphatase superfamily 25 178 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01870 Cmo-Chr4:9385055 Cmo08g01140 Cmo-Chr8:7275567 1.90E-22 dispersed
Cmo06g00943 Cmo-Chr6:7252324 Cmo08g01140 Cmo-Chr8:7275567 2.09E-20 dispersed
Cmo08g01140 Cmo-Chr8:7275567 Cmo10g00017 Cmo-Chr10:117082 2.23E-20 dispersed
Cmo11g02021 Cmo-Chr11:13784088 Cmo08g01140 Cmo-Chr8:7275567 1.49E-07 dispersed
Cmo16g01171 Cmo-Chr16:8345053 Cmo08g01140 Cmo-Chr8:7275567 1.54E-07 dispersed
Cmo08g01140 Cmo-Chr8:7275567 Cmo18g00757 Cmo-Chr18:9203880 2.33E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01140 - - bhj:120092603 319.701