Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01154 ATGCGAGGCCATGCTTGGATCAATACCATTCTTCCTGATGAGCTGATCATTGAGATCTTCCGGTGCCTTGACTCCAAGCTGAGTCGCGATGCTTGTTCTCTCGTCTGCAAGCGTTGGCTCAAACTCGAGCGACTCAGCCGAACCACTCTACGAATTGGCGCAACTGGTAGTCCTGAGCTCTTTGTTCAGCTCCTTGCTCGCCGTTTCGTCAATATCAGAAATGTCCACATTGACGAACGCTTGGCGATTTCTCTCCCCCTTCATTCAGGAAGAAGACGTCGCAATGAAGTCATGTGCTTGCCATTTAACTCACACCATGCAACTGATAATACTGGGGCTGAAGGTGCGCTGGAGTCTTCTTATCTGTCAGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAATCTGGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTAACATCCCTTGCTGAGAAGTGTAGGTTTTTGAAGTCGCTGGATCTACAGGGTTGCTATGTTGGGGACCAAGGTGTTGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCACATGGTTGTGGGAAATCATTGAAAACATTTGGTATTACAGCCTGTGCCAAAATAACGGATGTCTCATTAGAAGCTGTGGGTATGCACTGCAAATATCTGGAGTCTTTGTCGCTAGATTCGGAAATTATCCACAACAAAGGAGTGCTTTCTGTAGCCCAAGGATGCCCACTTTTGAAAGTCTTGAAGCTACAGTGTACAAATGTCACAGATGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTCACTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACAAGGGACTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATAGGCTTGGATGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAACGGCTGCCACAACATTGGATCGTTGGGACTAGAATCCATCGGAAAATCTTGCCACCAGCTCACTGAATTGGCTTTGCTGTACTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAGTTGCAAGTTCTTACAAGCACTCCACTTGGTAGATTGCTCGAGAATTGGAGATGAAGCGATATGTGGCATAGCAAAAGGATGCAGAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGGATGCAGGAATTGTAGCTATTGGCGAGAATTGCAAATTCCTCACAGATTTGAGCCTCAGATTTTGTGACAGGGTTGGTGATGAGGGGCTGATTGCCATTGGCAAGGGTTGTTCCCTTCTTCAGCTGAATGTTAGTGGGTGCCATCGCATCGGTGATGCGGGACTTGTAGCCATTGCTAGAGGTTGTCCTCAATTGAGTTACTTGGACGTGAGCGTTCTCGAGAACTTGGGGGATATGGCAATGGCTGAGTTAGGGGAAGGCTGCCCTTTGCTTAAGGACATAGTACTTTCTCACTGTCACCAGATAACCGATGCTGGTTTAATGCATTTAATGAAGAGATGCACCATGCTTGAATCCTGTCAAATGGTCTATTGTCCTGGCATCACCGCAGCTGGCGTCGCCACTGTCGTTTCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACAAAACGACGTGCAGGCTCGGTCATTTCCTACCTTTGCGTCGACCTCTAG 1818 45.76 MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHHATDNTGAEGALESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDQGVAAVGEFCKQLEDVNLRFCEGLTDTGLVELAHGCGKSLKTFGITACAKITDVSLEAVGMHCKYLESLSLDSEIIHNKGVLSVAQGCPLLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYFLSDIGLDAVAAGCKGLTHLEVNGCHNIGSLGLESIGKSCHQLTELALLYCQKIVNSGLLGIGQSCKFLQALHLVDCSRIGDEAICGIAKGCRNLKKLHIRRCYEIGDAGIVAIGENCKFLTDLSLRFCDRVGDEGLIAIGKGCSLLQLNVSGCHRIGDAGLVAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDIVLSHCHQITDAGLMHLMKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7374345 7379418 + CmoCh08G011540.1 Cmo08g01154 387887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01154 605 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 330 594 - -
Cmo08g01154 605 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 120 325 - -
Cmo08g01154 605 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 183 425 - -
Cmo08g01154 605 Gene3D Ribonuclease Inhibitor 172 355 IPR032675 -
Cmo08g01154 605 Gene3D Ribonuclease Inhibitor 356 605 IPR032675 -
Cmo08g01154 605 Gene3D - 7 47 - -
Cmo08g01154 605 SMART LRR_CC_2 263 287 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 392 417 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 444 469 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 495 520 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 340 365 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 547 572 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 288 313 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 521 546 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 418 443 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 160 184 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 212 237 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 185 210 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 314 339 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 470 494 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 366 391 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 134 159 IPR006553 -
Cmo08g01154 605 SMART LRR_CC_2 238 262 IPR006553 -
Cmo08g01154 605 SUPERFAMILY F-box domain 10 42 IPR036047 GO:0005515
Cmo08g01154 605 Pfam Leucine Rich repeat 159 180 IPR001611 GO:0005515
Cmo08g01154 605 Pfam Leucine Rich repeat 470 492 IPR001611 GO:0005515
Cmo08g01154 605 Pfam Leucine Rich repeat 444 466 IPR001611 GO:0005515
Cmo08g01154 605 Pfam Leucine Rich repeat 418 440 IPR001611 GO:0005515
Cmo08g01154 605 Pfam Leucine Rich repeat 521 544 IPR001611 GO:0005515
Cmo08g01154 605 Pfam Leucine Rich repeat 188 208 IPR001611 GO:0005515
Cmo08g01154 605 Pfam Leucine Rich repeat 343 362 IPR001611 GO:0005515
Cmo08g01154 605 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 330 594 - -
Cmo08g01154 605 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 120 325 - -
Cmo08g01154 605 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 183 425 - -
Cmo08g01154 605 SUPERFAMILY RNI-like 336 586 - -
Cmo08g01154 605 Pfam F-box 11 48 IPR041567 -
Cmo08g01154 605 SUPERFAMILY RNI-like 120 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01154 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1104.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01154 Cmo17g00271 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01871 Cmo-Chr1:13556473 Cmo08g01154 Cmo-Chr8:7374345 3.43E-12 dispersed
Cmo08g00593 Cmo-Chr8:3604846 Cmo08g01154 Cmo-Chr8:7374345 6.65E-14 dispersed
Cmo08g01154 Cmo-Chr8:7374345 Cmo12g00287 Cmo-Chr12:1823603 9.15E-34 dispersed
Cmo10g00584 Cmo-Chr10:2659012 Cmo08g01154 Cmo-Chr8:7374345 3.14E-06 dispersed
Cmo11g01665 Cmo-Chr11:11814946 Cmo08g01154 Cmo-Chr8:7374345 1.91E-08 dispersed
Cmo11g01974 Cmo-Chr11:13574096 Cmo08g01154 Cmo-Chr8:7374345 7.76E-06 dispersed
Cmo15g00645 Cmo-Chr15:3131902 Cmo08g01154 Cmo-Chr8:7374345 7.37E-19 dispersed
Cmo16g00217 Cmo-Chr16:954777 Cmo08g01154 Cmo-Chr8:7374345 2.04E-11 dispersed
Cmo04g01335 Cmo-Chr4:6811567 Cmo08g01154 Cmo-Chr8:7374345 6.66E-14 transposed
Cmo09g01054 Cmo-Chr9:5698149 Cmo08g01154 Cmo-Chr8:7374345 1.90E-16 transposed
Cmo11g01247 Cmo-Chr11:7832813 Cmo08g01154 Cmo-Chr8:7374345 7.00E-07 transposed
Cmo14g00030 Cmo-Chr14:156024 Cmo08g01154 Cmo-Chr8:7374345 2.91E-06 transposed
Cmo20g00346 Cmo-Chr20:1693377 Cmo08g01154 Cmo-Chr8:7374345 3.11E-17 transposed
Cmo17g00271 Cmo-Chr17:1620433 Cmo08g01154 Cmo-Chr8:7374345 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01154 Cmo_Chr08 FPKM 1.099386 1.819958 0.952359 0.792245 1.207224 1.55834 1.504509 1.605131 1.46564 1.601933