Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo08g01158 | ATGGGTTGTATCCACACAAAATGTTGCTGTCGGTACCCAAAATCATTGGTTGGAGAATCCCAGGACTTTCACCAAGGGGTTCCTTACTGTCTACAAGATAACAACACTGTGATAGAAAGAGCATTGGAGCTTATTCCTGTGGCTTCCCACAACTATCATTTGGATTACTTGGTATTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAATCAAGACAGTTTCTGTATTAGAACAAATGTTCAAGGTAACCCAAATGCTCATTTTTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGACAGGTTAATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCTGTTCAAGCTTATAATTCAGCGTTTTTATCCACTAATGATGAACTGCATTCAAGTGAAATAGATGATTCCATGAGTGGAACAACAGCAATTACAGTCCTTGTTGTTGGGGATACTCTTTATGTAGCCAATGTGGGTGATTCAAGAGCTGTAATTGCTGTTAAAGAAGGGAATTGTGTTCTTGCCAAAGATTTGTCAAATGATCAAACACCATTTAGAAAGGACGAATATGAGAGGGTTAAGCTTTGTGGAGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGTGATGAAGAAAGTCAGGGCGGCGATCCGCCTCGACTTTGGGTTCAAAATGGGCTGTATCCTGGGACTGCATTTACCAGGAGCATAGGTGATAGTACCGCCGAGCAGATCGGTGTAAATGCTGTTCCTGAGGTTTTAGTTCTTCAGCTCAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGCCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGTACCGCCATAGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGTACCGATGATATAACCATCATTATTATTCATATCAAAGGCTTGTCTAATGTATGA | 1056 | 40.72 | MGCIHTKCCCRYPKSLVGESQDFHQGVPYCLQDNNTVIERALELIPVASHNYHLDYLVLAQRGYYPESPDKENQDSFCIRTNVQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFLSTNDELHSSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEQIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIIHIKGLSNV | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7400661 | 7402659 | + | CmoCh08G011580.1 | Cmo08g01158 | 387891 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo08g01158 | 351 | Pfam | Protein phosphatase 2C | 74 | 324 | IPR001932 | - | |
| Cmo08g01158 | 351 | CDD | PP2Cc | 71 | 328 | IPR001932 | - | |
| Cmo08g01158 | 351 | ProSiteProfiles | PPM-type phosphatase domain profile. | 55 | 345 | IPR001932 | - | |
| Cmo08g01158 | 351 | PANTHER | PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN | 40 | 350 | - | - | |
| Cmo08g01158 | 351 | Gene3D | - | 50 | 347 | IPR036457 | - | |
| Cmo08g01158 | 351 | ProSitePatterns | PPM-type phosphatase domain signature. | 91 | 99 | IPR000222 | GO:0043169 | |
| Cmo08g01158 | 351 | SUPERFAMILY | PP2C-like | 48 | 347 | IPR036457 | - | |
| Cmo08g01158 | 351 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 40 | 350 | - | - | |
| Cmo08g01158 | 351 | SMART | PP2C_4 | 47 | 343 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo08g01158 | Cmo14g01709 | CCT | |
| Cmo08g01158 | Cmo17g00274 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo08g01158 | Cmo-Chr8:7400661 | Cmo10g00684 | Cmo-Chr10:3120320 | 8.76E-143 | dispersed | |
| Cmo14g01709 | Cmo-Chr14:13411004 | Cmo08g01158 | Cmo-Chr8:7400661 | 1.56E-174 | wgd | |
| Cmo17g00274 | Cmo-Chr17:1648265 | Cmo08g01158 | Cmo-Chr8:7400661 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo08g01158 | - | - | cmax:111494336 | 715.301 |