Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01158 ATGGGTTGTATCCACACAAAATGTTGCTGTCGGTACCCAAAATCATTGGTTGGAGAATCCCAGGACTTTCACCAAGGGGTTCCTTACTGTCTACAAGATAACAACACTGTGATAGAAAGAGCATTGGAGCTTATTCCTGTGGCTTCCCACAACTATCATTTGGATTACTTGGTATTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAATCAAGACAGTTTCTGTATTAGAACAAATGTTCAAGGTAACCCAAATGCTCATTTTTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGACAGGTTAATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCTGTTCAAGCTTATAATTCAGCGTTTTTATCCACTAATGATGAACTGCATTCAAGTGAAATAGATGATTCCATGAGTGGAACAACAGCAATTACAGTCCTTGTTGTTGGGGATACTCTTTATGTAGCCAATGTGGGTGATTCAAGAGCTGTAATTGCTGTTAAAGAAGGGAATTGTGTTCTTGCCAAAGATTTGTCAAATGATCAAACACCATTTAGAAAGGACGAATATGAGAGGGTTAAGCTTTGTGGAGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGTGATGAAGAAAGTCAGGGCGGCGATCCGCCTCGACTTTGGGTTCAAAATGGGCTGTATCCTGGGACTGCATTTACCAGGAGCATAGGTGATAGTACCGCCGAGCAGATCGGTGTAAATGCTGTTCCTGAGGTTTTAGTTCTTCAGCTCAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGCCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGTACCGCCATAGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGTACCGATGATATAACCATCATTATTATTCATATCAAAGGCTTGTCTAATGTATGA 1056 40.72 MGCIHTKCCCRYPKSLVGESQDFHQGVPYCLQDNNTVIERALELIPVASHNYHLDYLVLAQRGYYPESPDKENQDSFCIRTNVQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFLSTNDELHSSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEQIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIIHIKGLSNV 351
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 7400661 7402659 + CmoCh08G011580.1 Cmo08g01158 387891
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01158 351 Pfam Protein phosphatase 2C 74 324 IPR001932 -
Cmo08g01158 351 CDD PP2Cc 71 328 IPR001932 -
Cmo08g01158 351 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Cmo08g01158 351 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 40 350 - -
Cmo08g01158 351 Gene3D - 50 347 IPR036457 -
Cmo08g01158 351 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Cmo08g01158 351 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Cmo08g01158 351 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 40 350 - -
Cmo08g01158 351 SMART PP2C_4 47 343 IPR001932 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo08g01158 Cmo14g01709 CCT
Cmo08g01158 Cmo17g00274 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01158 Cmo-Chr8:7400661 Cmo10g00684 Cmo-Chr10:3120320 8.76E-143 dispersed
Cmo14g01709 Cmo-Chr14:13411004 Cmo08g01158 Cmo-Chr8:7400661 1.56E-174 wgd
Cmo17g00274 Cmo-Chr17:1648265 Cmo08g01158 Cmo-Chr8:7400661 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01158 - - cmax:111494336 715.301