Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01162 ATGGACTCTGATCCTGAATCTCCGGCTTCTTCCACCAGTAAGGCGTCCGAGCGAACGTTGCAAAGATCGAAGGTGTTGGAACCTTCAACTGTAGACAAATTGGATCAGCAAGAGTCGGAGGATATAGCTTGGTGCGATTCGATTGAACCTCAAGCGTCCGAAAGCAATGATTCAGGCGACACGGTTGATGAAAACCAATCAAATGATCAGACCGAAAATCAATCAAATGATCAGACAGAAAACCAATCAAATGATCAGGCAGATCAAGCAGTGGGCACTCCCACTTCAGGGAGCAGAAGAGTGCGTGGATTCTCCGACACAATTGTCATTCATGATTTGAGATTATTAGATTTGGACGTTGAAAGAAAAAATGAATCATCTCCAAGAGGGGTGCTCGAGGACTGCTCAAGAAACTTGGATTGTGAAACAACTACTTCCCTGGCCAGCACTTCCGATTGGGAAGATCATCCGGACTCAAGAAATCTGAGTCATTGGAAAGGTTTCATTCGCTTACTGATGAAAGGACCTCAAATGCGATTTCAAACCTTTCCTCCTCTTAAAGCTGTTCCAAAGCTCACCAGAAAAAAGAGCAAAAGAATTAGAGAGGATGTTCTTCCGACGTTATCACCAGTGATGGACTCTGCCATAGAGACTGAGTTCTGCTACTTCAGATCTTCTTGGAAGAATTTCACACTTTCAGAGCTGCAAGCTGCAAGCAATAACTTCAGCCAAGAAAACTTGATTGGTGAGGGCGGTTATTCTGAAGTTTACAAGGGGCAGTTGGAAGATGGGCAATTAGTCGCGATCAAGCGGCTTACAAGAGGCAACCCAGAAGAGATGACTGCAGACTTCTTGTCTGAGCTCGGAATTATAGTTCATGTTGATCATCCTAATATTGCGAATGTAATTGGGTACGGAGTTGACGGGGGAATGCACCTTATACTTCATTTATCACCCCATGGGAGCCTGGCATCCATACTTTATGAATCAAAGGAGAGACTGGATTGGCCAACCAGGTATAGGATTTCTCTAGGAATTGCTGAAGGTCTTTTGTATCTTCATGAAGGCTGCCAAAGAAGAATAATCCACAGAGATATTAAGGCTGCTAATATATTGCTAAGAGATGATTTTGAGCCTCAGATTTCTGACTTTGGGCTTGCTAAGTGGCTGCCAGATCGATGGACTCACCATACTGTATCAAAGTTTGAAGGAACATTCGGGTACCTTCCTCCCGAGTTCTTTATGCATGGAATTGTTGATGAAAAAACTGATGTCTATGCCTATGGAGTACTGTTGTTGGAACTTATTACGGGACGACGAGCAATAGACAGCGCACAGCAAAGCCTCGTGATGTGGGCGAAACCTGTACTTCTTAAACAAGATCTCAAGGAGCTTGTCGATACATCACTTGCTGACGCATTCGACACCCAACAAATGAACCGTTTGATATCCGTCGCTTCAATGTGCATAGATCAATCTTCAGTTCAACGGCCAGAAATGAGTGAGATTGTTCAGATTCTAAAAGGAGATGAAGATAGTTTGGAGCGTGTAAAGCGACAGAAGTCAAAACTTCGAAGGACGTACTCTGCAGAGCTTTTGGATGCAGAGGAGTATAATTCTACAAAGTATTTAACTGACATGGATCGACATTTGGAAATTGTTTTAGGAACCTGCGATGTTTAG 1683 43.49 MDSDPESPASSTSKASERTLQRSKVLEPSTVDKLDQQESEDIAWCDSIEPQASESNDSGDTVDENQSNDQTENQSNDQTENQSNDQADQAVGTPTSGSRRVRGFSDTIVIHDLRLLDLDVERKNESSPRGVLEDCSRNLDCETTTSLASTSDWEDHPDSRNLSHWKGFIRLLMKGPQMRFQTFPPLKAVPKLTRKKSKRIREDVLPTLSPVMDSAIETEFCYFRSSWKNFTLSELQAASNNFSQENLIGEGGYSEVYKGQLEDGQLVAIKRLTRGNPEEMTADFLSELGIIVHVDHPNIANVIGYGVDGGMHLILHLSPHGSLASILYESKERLDWPTRYRISLGIAEGLLYLHEGCQRRIIHRDIKAANILLRDDFEPQISDFGLAKWLPDRWTHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRRAIDSAQQSLVMWAKPVLLKQDLKELVDTSLADAFDTQQMNRLISVASMCIDQSSVQRPEMSEIVQILKGDEDSLERVKRQKSKLRRTYSAELLDAEEYNSTKYLTDMDRHLEIVLGTCDV 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7414969 7420024 + CmoCh08G011620.1 Cmo08g01162 387895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01162 560 MobiDBLite consensus disorder prediction 49 100 - -
Cmo08g01162 560 ProSiteProfiles Protein kinase domain profile. 242 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01162 560 Pfam Protein tyrosine and serine/threonine kinase 245 507 IPR001245 GO:0004672|GO:0006468
Cmo08g01162 560 MobiDBLite consensus disorder prediction 1 100 - -
Cmo08g01162 560 MobiDBLite consensus disorder prediction 1 27 - -
Cmo08g01162 560 Gene3D Phosphorylase Kinase; domain 1 213 316 - -
Cmo08g01162 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Cmo08g01162 560 SMART serkin_6 242 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01162 560 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 91 544 - -
Cmo08g01162 560 Gene3D Transferase(Phosphotransferase) domain 1 319 532 - -
Cmo08g01162 560 ProSitePatterns Protein kinases ATP-binding region signature. 248 270 IPR017441 GO:0005524
Cmo08g01162 560 PIRSF ILK 223 527 - -
Cmo08g01162 560 PIRSF ILK 29 94 - -
Cmo08g01162 560 PANTHER OS08G0249100 PROTEIN 91 544 - -
Cmo08g01162 560 SUPERFAMILY Protein kinase-like (PK-like) 222 507 IPR011009 -
Cmo08g01162 560 Coils Coil 507 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01162 - - - cmos:111436808 1117.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00925 Cmo-Chr4:4653727 Cmo08g01162 Cmo-Chr8:7414969 4.31E-141 dispersed
Cmo05g01187 Cmo-Chr5:9315752 Cmo08g01162 Cmo-Chr8:7414969 3.13E-169 dispersed
Cmo08g01162 Cmo-Chr8:7414969 Cmo19g00004 Cmo-Chr19:35656 1.76E-155 dispersed
Cmo08g01162 Cmo-Chr8:7414969 Cmo12g01109 Cmo-Chr12:10113367 8.34E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74546 PF07714 PK_Tyr_Ser-Thr 1.10E-41 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01162 Cmo_Chr08 FPKM 5.417367 4.873342 0.480475 0.122185 2.380642 1.722585 4.53171 0.100011 0.084757 0.447529