Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01170 ATGAGAGCTTCAAATCATGGCTTCTTCTCCCTCTTTTCTGTACTGCTTCTCAGTACTCTCGTTGCTGTTCAAGCCGTCCCCAAGGGCGCTCTGAGCAATAATGCCTATTGGCGAACCTGCCCCAAAGCTTTGAGAATTATCCGAGACACCACCTTCCGACTCGCTCGATCGAACCCCGGTCTCGGAGCGCAACTCCTCCGAGTTCAATTCCACGACTGCTTCGTTCGGGGATGCGATGCCTCGGTTCTGTTAGATAGTATCACCGGAAACCCGTCGGAGAAGGAAGCAAGACCGAACTTATCGTTATTAGGGTTCGATGCCATTGACACAATCAAGTCGGAGGTTGAGAAGGCTTGCCCTGGAGTTGTCTCGTGTGCCGACATTCTTGCCGTTTCTGCTCGTGATGCTGTTTCCTTTCCGGTGAGTTGTCTCTTCAAAAACCGGCGGCTGTGGCCAGTTTTAACCGGAAGAAGAGATGGAACTGTTTCGCGATCATCGGAAGTTACCGGCAATATCCCGTCGCCGTTCTCTAATTTCACCACTCTTAAGCAAATCTTTGAGAATAAAGGCCTTACCGTGAGCGATCTGGTGATTTTATCAGGTGGGCATACAATTGGAGTAGCTCATTGTGGCACATTCTCAAGGAGGCTCTACAACTTCACAGGCCAAGGGGACGCAGATCCTTCATTAAATCCAATCTACGCCAACTTTCTAAGACAAAAATGTCCAAATCCAGCTGATTCTTCAATTACCGTAGAAATGGACCCAAAGAGTTCACGTTCATTTGACACTGATTATTTCAAGATCCTCACACAGCACAAAGGTTTGTTTCAATCCGATGCGGCGCTCTTGACCGACGACTCGTCGTCTCGGATCGTCAAAGAGTTGCAGAAGCCCAAAGCTTTCTTCCCTAGCTTTGCTAACTCCATGTTGAAGATGTCAGCCATTGAAGTCCTCACTGGCAAGAATGGTGAAATCAGGAAACGATGTCGTTTTGTTAATTGA 1005 48.06 MRASNHGFFSLFSVLLLSTLVAVQAVPKGALSNNAYWRTCPKALRIIRDTTFRLARSNPGLGAQLLRVQFHDCFVRGCDASVLLDSITGNPSEKEARPNLSLLGFDAIDTIKSEVEKACPGVVSCADILAVSARDAVSFPVSCLFKNRRLWPVLTGRRDGTVSRSSEVTGNIPSPFSNFTTLKQIFENKGLTVSDLVILSGGHTIGVAHCGTFSRRLYNFTGQGDADPSLNPIYANFLRQKCPNPADSSITVEMDPKSSRSFDTDYFKILTQHKGLFQSDAALLTDDSSSRIVKELQKPKAFFPSFANSMLKMSAIEVLTGKNGEIRKRCRFVN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7444955 7446655 - CmoCh08G011700.1 Cmo08g01170 387903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01170 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Plant peroxidase signature 253 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Plant peroxidase signature 308 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PANTHER PEROXIDASE 8 333 - -
Cmo08g01170 334 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601
Cmo08g01170 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Cmo08g01170 334 Gene3D Peroxidase, domain 2 173 313 - -
Cmo08g01170 334 Pfam Peroxidase 53 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PANTHER PEROXIDASE 25-RELATED 8 333 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 CDD secretory_peroxidase 31 333 IPR033905 GO:0004601|GO:0042744
Cmo08g01170 334 SUPERFAMILY Heme-dependent peroxidases 31 334 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 Gene3D - 36 334 - -
Cmo08g01170 334 ProSiteProfiles Plant heme peroxidase family profile. 30 334 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Haem peroxidase superfamily signature 255 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01170 334 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01170 Cmo-Chr8:7444955 Cmo11g01911 Cmo-Chr11:13273050 1.34E-98 dispersed
Cmo08g01170 Cmo-Chr8:7444955 Cmo02g00159 Cmo-Chr2:771614 6.45E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01170 K00430 - csv:101215642 488.034