Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01172 ATGGCTCCATTTGGAGGCGATCGCGAGGACATTGATTGTACCGACACCGAAGTCTTTGATGGCCAGCTTTCACCGCCCTCATGTTCTGGTGAGGAAACGGATAAGGCTTCATATTCTTCAGGAGCAGATCGTTTTTATGATGACGATTTTGAAACTCAAGTAGTAAATTTTGCTGGAGAAACTCAAGTCGTGAATCCTCTAAATGATGAGTTTGAAACTCAATTAATGAATCCTTTAAATGATGAGTTTGAAACTCAATTAATGAGTCCTATAAATGATGAGTTTGAAACTCAGTTAGTGAATCCTCTTGGAGAAACTCAAGTGTTCAATGTTGCGAGTGAAACTCAAACTTTGAGTGTCTGTGGTGAAACCCAGCAACTTGATGATCCTATTCCTGATGGCATCGAGTGTATGGACTTTGACACTCAAATATTGAATGATTTTGATGATGAAATGGCTGGTGATTCCTATGAAGATGAAGGATCAAAGGGAACTGAAATTAATGTCGTCGAAGATCTAACTGATGATGAATCAGCCCAAAGTTTCTATCCATCCATGGAGAAGGATAAGGTTCAATTGAGCCCTCTTAGTGATCATGATGCGAGGAAGGATTTAAAGGCGCTACTGGACAAGTTGCCTGATAAAAAATGTAATTCAGGGCCTACACGACTTTCTTCAATACGTGCAGCTTCATTGCGTTCTTCTGGTTCAGCAGCCCGCAGTTCTGCCTTGCAGAATAGAAATCTTGGGTCATGTTCTGTTATGATTGACAAGGATATTGAAAAATCATCGGTAAAAGATAATCACATTGATCAACAGACTGATCTCGAGCAGTGCTGTGAGAATGCTGGAGAATTAGGTAACGTGAAGTGCAGAGCTGGCAGTTCAGCAGTGAGAAAACTTTTTACGAAAGACATTGTGGGAGACTTCGGTGATCTTCACTCAAGTTGTGATGTTGGCGACATGAACATACACGAGTTGACTGCATGCGATGGTGATCAGTTGGCAGGCTTAAGCTATGTTGATTCTCAAGAACCTGGGGATTTAATGCAAGACAATGCTCTTGATTTTGTCGATAAGTTTCTTAAAAACAATTCTTTGGAGTTTGATCAAGGAGGGGGTGCCCGTAAATTGGATGCTATCGTGCAAACAAAGTCGGTTGTTAGCCCTAAAGGGCAATATAATCTGGCCAAAATTGTTAACTGTATGAGAACAGTTGGAGAATCAAGAGTTTTTGACTGGGACGATAATCGGGAAGATGAAGGAGGTGGGGATATTTTCTGCCGAAGGAAGGAAGAGTTCTTCACTGAACCTCGAAAATCGAAAGGAAGAAGACCAGACTCGAACTGTGATATTAAAGGATCTTTAAGTATCCCAAACATGAAATCAAGGTTATTTTGTTCTGATTCACGCATAGAGTTGAGTAAAGGAAGCGAGAATAACGAGACAGCCCGAGAAGCCAAAGTCAAATGTAAAAAGAATCTATGCAATAAACTGGATCGGCAGAATGATGGTGATGCTTGTAGGGTAGAGTCGGAAGACAACGACATCGAGCCTAATCAGCAAGAAATCCCTGATGTAGGTTTCGATACTCAGATGGCAGCCGAGGCACTGGAAACATTATTCAATGATGAGAGCATCAATAAGCTAGTTAATAATGAAGCAAATCAACATTTGGAAAATAGTCCAAAGGATTCTTTTGGAGGCTCTCCTACTGGAAGGTCAAACACTAGCTCGAACACGAGGAAATCCTTGAAAAAGGGACGTGCTTCTAGTTCCGGGGTTGTCCCGAGGCAGTCCAAGAAAATAAACCAGAAGTTTTCTGGAAATTTCATGAAGGCGTGTGAAAATGAGACTGTAAAAATGTCAAGGAGGAATAATAAGACAGATGCTGATGGAATCATTGGTAATGGAAACACAGGCAGTGTGCCGAGCAATGTTGCTAAGGTTTCACCTGTTGCACGTCGAACCAGGCATTCAATGACAGTAAATCAATCGAAAAAGGCTAAAGTTGCATCTGGTGAATGTGAGCAGTCGGTTACAAAGGTTGGTCCATTAATCAAGAAAAGAAGTGCTGATCGAGCCACTGGGGACCCGAAGGCAAAGAGAACAAAATCTCGGGAGGCAGTTTCTAAGATACTTGTAACCAAGTCGAAAGAAGGCACTAAAAGTGATGCAACAAGCTCCATAGGACAACGAAGATCGTGTGATATGTTAGCCGGTCAGGTAAGTCTATCTGATGAGTTAGTTGGACAAACTGTAATTAGGCGCCCGAGGTCATGTTCCACGAGGAAAACACGATCGTCATTAGGTGTTATTTCATCTCTTGCTTCAAATGAGAACTTGGAAAGAGCAGGTGCAGAAAAATCTAATGATGGAAATATAACAATTAAGGATGGATGTATGGTTTCTTCTGTTGTAAAGACTACGTCAGATGAATCTCCTAGTAAAAGACGTAAACCATCCGACACGGTTTGTTCTACTCCGCCTGATAATTGTAGGACGCCTATAAATGCCGTATCACCCGTTTGTATGGGTAACGAGTATTACAAACAATCATGCAAAAAGAGCCCCTTCAAACCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCCACGGGGCTTGTATCGGGACCCTTATCAACTGAATCAAGGAGGAGAAAAGATATGAACGACGTTCAAGTCTTGTATAGCCAGCACCTCGATGAGTACATAATCAAACAACAAAAGAAGACGTTGACTCGCCTAGGGATTAAAGTGGTATCGTCCATGACCGAGGCAACACATTTCATAGCTGATAAATTTATTCGTACAAGGAATATGTTAGAAGCCATTGCTCTGGGTAAGCTTGTGGTGACACACCAATGGATTCAGAGTTGTGGACAAGCGAGATGCTTCATCGACGAAAAAAATTACATCCTACGAGACGCCAAAAAGGAGAAGGAATTTGGATTTAGCATGCCAGGTTCGCTGGCGAGTGCTCGTCAGCATCCTCTTCTAGAGGGTCGACGAGTGTTGATTACTCCAAATACAAAACCCGGGAAAGACGTCATTTCGAGCTTGGTCAAGGCAGTGAAGGGCCAGGCAGTAGAGAGGCTGGGGAGGTCCATGCTGAAGGATGATCAAATTCCAGATGATTTGTTGATTTTGTCATGTGAAGAAGATTATGATATGTGTATGCCTTTTCTTGAAAAAGGAGGTGCAGTGTATGGTTCCGAGCTGCTGCTTAACGGGATCGTAACTCAAAAGCTCGAGTTTGAAAGGTATCGTCTTTTTGTAGATCAAGTCAAGAGAACTCGGTCGACGATATGGCTCAAGAAAGATGGCAATAAGTTCCATCCTGTTTCTAAACATCATTAA 3360 42.02 MAPFGGDREDIDCTDTEVFDGQLSPPSCSGEETDKASYSSGADRFYDDDFETQVVNFAGETQVVNPLNDEFETQLMNPLNDEFETQLMSPINDEFETQLVNPLGETQVFNVASETQTLSVCGETQQLDDPIPDGIECMDFDTQILNDFDDEMAGDSYEDEGSKGTEINVVEDLTDDESAQSFYPSMEKDKVQLSPLSDHDARKDLKALLDKLPDKKCNSGPTRLSSIRAASLRSSGSAARSSALQNRNLGSCSVMIDKDIEKSSVKDNHIDQQTDLEQCCENAGELGNVKCRAGSSAVRKLFTKDIVGDFGDLHSSCDVGDMNIHELTACDGDQLAGLSYVDSQEPGDLMQDNALDFVDKFLKNNSLEFDQGGGARKLDAIVQTKSVVSPKGQYNLAKIVNCMRTVGESRVFDWDDNREDEGGGDIFCRRKEEFFTEPRKSKGRRPDSNCDIKGSLSIPNMKSRLFCSDSRIELSKGSENNETAREAKVKCKKNLCNKLDRQNDGDACRVESEDNDIEPNQQEIPDVGFDTQMAAEALETLFNDESINKLVNNEANQHLENSPKDSFGGSPTGRSNTSSNTRKSLKKGRASSSGVVPRQSKKINQKFSGNFMKACENETVKMSRRNNKTDADGIIGNGNTGSVPSNVAKVSPVARRTRHSMTVNQSKKAKVASGECEQSVTKVGPLIKKRSADRATGDPKAKRTKSREAVSKILVTKSKEGTKSDATSSIGQRRSCDMLAGQVSLSDELVGQTVIRRPRSCSTRKTRSSLGVISSLASNENLERAGAEKSNDGNITIKDGCMVSSVVKTTSDESPSKRRKPSDTVCSTPPDNCRTPINAVSPVCMGNEYYKQSCKKSPFKPSLLKELRDLTATGLVSGPLSTESRRRKDMNDVQVLYSQHLDEYIIKQQKKTLTRLGIKVVSSMTEATHFIADKFIRTRNMLEAIALGKLVVTHQWIQSCGQARCFIDEKNYILRDAKKEKEFGFSMPGSLASARQHPLLEGRRVLITPNTKPGKDVISSLVKAVKGQAVERLGRSMLKDDQIPDDLLILSCEEDYDMCMPFLEKGGAVYGSELLLNGIVTQKLEFERYRLFVDQVKRTRSTIWLKKDGNKFHPVSKHH 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7458719 7464009 - CmoCh08G011720.1 Cmo08g01172 387905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 20 36 - -
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 807 830 - -
Cmo08g01172 1119 Gene3D BRCT domain 882 995 IPR036420 -
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 657 672 - -
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 1 42 - -
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 652 676 - -
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 558 602 - -
Cmo08g01172 1119 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 887 974 IPR001357 -
Cmo08g01172 1119 CDD BRCT_MDC1_rpt1 906 967 - -
Cmo08g01172 1119 Gene3D BRCT domain 996 1099 IPR036420 -
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 690 714 - -
Cmo08g01172 1119 CDD BRCT_PAXIP1_rpt6_like 999 1085 - -
Cmo08g01172 1119 ProSiteProfiles BRCT domain profile. 885 974 IPR001357 -
Cmo08g01172 1119 SUPERFAMILY BRCT domain 885 990 IPR036420 -
Cmo08g01172 1119 MobiDBLite consensus disorder prediction 690 733 - -
Cmo08g01172 1119 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 124 1099 - -
Cmo08g01172 1119 SMART BRCT_7 887 964 IPR001357 -
Cmo08g01172 1119 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 124 1099 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01172 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - csv:101217520 1414.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01172 Cmo17g00291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00291 Cmo-Chr17:1752452 Cmo08g01172 Cmo-Chr8:7458719 8.10E-62 transposed
Cmo17g00290 Cmo-Chr17:1751798 Cmo08g01172 Cmo-Chr8:7458719 4.97E-12 wgd
Cmo17g01108 Cmo-Chr17:9096314 Cmo08g01172 Cmo-Chr8:7458719 6.84E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01172 Cmo_Chr08 FPKM 1.122939 1.645603 10.657927 9.777683 2.18298 2.035265 1.134799 4.584855 5.252279 6.443476