Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01173 ATGAGTTGCAACAAAGATGAAGCCGTTAGAGCAATGGAGATTGCTGAGAAGAAGATGGAAATCAAAGATTTCATCGGGGCTCGTAAGTTAGCTCTCCGGGCTCAACAGCTCAATCCTGACGGGGAGAATATTTCACAAATGCTTATGGTTTGTGATGTGCATTGTGCGGCAGAGAAGAAACTGTCTGGGAATGAGATGGATTGGTACGGTATTCTTCAGATCGAGCAAACGGCAAATGAGGCGACAATTAGGAAGCAGTACCGGAAGTATGCTCTTCTACTTCATCCCGACAAAAACAAATTTATGGGTGCTGAAGCTGCTTTCAAGTTGGTTGGTGAAGCTCAGAGAATTTTGTTGGACCAAGAGAAACGTCGATTGCATGATATGAGACGAAAACCGACAGTATCGCATCGATCTCCACACAAAGCTGCTTCAACCTTTGATGTTGGGGTTCAAGCTAACTTCAGAAACAACTTTACAAGATTCGTTCCTCAACATCAGCCCCCTCAACAGCACGGACACTCGGGGTTCGGTCATAATCATGCTACTTTTTGGACTGTCTGTCCATTTTGTTCAGTGAGGTATCACTACTATAAAGAAGTGGTTAATAGATCACTTTGCTGTCAGAATTGCAAGAGTCCCTTTGTTGCATATGATATGGAACTCCAAGGATCTCACCCTCGACCAGCGTATAACTTCAACCAGACATCATTTTTCCAGAAGAAGAATTTCTTCAATCACAGGGCGGAGACGGGACGCCCCAGACGCCCCAGAAACTCTCGGTCTGAGAAGGATAGAGCAGAATCTTTTCAGAGGACACGCAAAACTTCAGGTGGTGCTGTGGGGAAGTTCAATACTAAGAAAAAAAGGAAGCAGAGTTCCGAATCCAGTGACAGCTGCGATACTGGAAGTAGCTTCGAGTCTGAAGAGAACGTCATTACTGATGAAGTTAGCAGAAAGGATATTGGATGCACTGGTGAGCATCGTCCACGAAGATCAAGTCGACACAAGCAAAAGATTTCTTACGGTGAGAATATAAGTGACGGTGACGACGACGACGACGACGACGACTTTGAGATCACACCAAAAAAGTCAAGCAGAAGAGTACCATCCGACACTTCGGATGACGATATTGAAGAAGTATACGTGGATGATAGGTCTGTTGATGTGGATAATGATCAGAGGGAAACAAATGAGCCAGAAAATAATGGCACTGAAGGGAGTTCATCACGGAGAAGCACGGGAAGTAAGAAGGCGAGCCAAAAAGAAACAGCAGATAAGAATGTTCCTCAGAGAAGAATGAAGTCAGCTGGTGATCCCGAGCCTAATTCGCTCGAACGTCATGATCCTGATTTCAACGATTTTGATAAACTGCGTAATCGGGACTGTTTTTCTCCCGGGCAGATCTGGGCTATGTATCGTGATATTGATACCATGCCTCGATCTTATGCTCGGATCGAGAAAGTGTTTCCTTCAGAATTCAAGATTCAAGTCACTTGGCTAGAGCCAGAAGCAACTGATAAAAAAATGCCAATTTCCTGCGGTGATTTTGTATTTGGAGCAACTGAAACCATGACAGATTGTGGTTCGATGTTTTCTCATGCTGTTTCTTGGGACAAAGGCGGCCGTAAAGACAGTTTCAAGATTTTTCCAAGAAAAGGGGAAACTTGGGCTCTCTTCAAGAACTGGGATAAGAATAGTCAATGTGATTCCAATAGCGAAGCCGAATATGAGTTTGTCGAGACATTATCGGAATATACCGAAGAAGCTGGTATTGACGTTGCACTCTTAGCTAAAGTGAAGGGCTTTTCGAGTCTCTTTTGTCAAATGGTCGATCAAGAAGGAAAATCATTTCGAATCCCTGCAGATGAATTGTTCAGATTTTCGCACAGGATACCTTCGTTTCCACTCACAGGTGACGAACGAGAGGATGTTCCAAAAGGTTCTTTCGAACTCGATCCAGCTGCTCTTCCCCCCAATATTCCAGAGATTGCCATCCCCGAGCATTTGAAAGAGATGGCTGGCGATACTGGTCACGACACATTGAAGCCCACGAGGCGGCCTAAATGCAGGGAGGCTGCTGCTGATGTTAAGAGTGATCTCTCGTCTGAGAGCGATGATGATTGCGCACATGTAGCCTCGTCGGGTGAGGCTTACGAAATTCCAGATCCTGAATTTCACAACTTCGACGTCGACAAATCTTCTGACAAGTTTAAGATTAATCAAGTCTGGGCACTGTACAGCGACGAGGATGCTTTGCCTAGATATTATGGTCTGATCAGGAAGATAACCCGGGAACCGAAGTTCGAAGTGAAGTTGACGTGGCTCGAGCCCTCTGCACTGCCAAGTGACGCTATTGAATGGGACGACAAAGATATGCTGATTTCTTGTGGGAAATTTAGAACTCAGAGGAGGACTAGCATGCACTGCTGCAATTCCACTGGCTCCTTCTCACATCTGGTTAAAACTAATTCTTCTCCAAAGAATGAGATTTCCATCTCTCCTAGAAATGGTGAAGTTTGGGCATTGTATAAGAACTGGACTCCAGAATTCAGATGTTCAGATTTGGATAAATGTGTATACGAGATAGCAGAAGTCATCGACGAGGACGATTTGCAAAAGGAAGTTATGGTCTTGGAACGCGTCGATGGTTATAACTCGGTCTTCAAGGCTCGAGCAAAAAACGATGGCTCAACGCTCACTATGGTAATCACCCAGGCCGAGCTTCTACGATTCTCCCATCAGATTCCTGCTTTTCGGTTGACTGATGAGCGGGGTGGTAGCTTGAGAGGTTGCTTGGAACTTGATCCTGCTGCTTTACCGGTATATTTTTTTCCTTGA 2841 44.95 MSCNKDEAVRAMEIAEKKMEIKDFIGARKLALRAQQLNPDGENISQMLMVCDVHCAAEKKLSGNEMDWYGILQIEQTANEATIRKQYRKYALLLHPDKNKFMGAEAAFKLVGEAQRILLDQEKRRLHDMRRKPTVSHRSPHKAASTFDVGVQANFRNNFTRFVPQHQPPQQHGHSGFGHNHATFWTVCPFCSVRYHYYKEVVNRSLCCQNCKSPFVAYDMELQGSHPRPAYNFNQTSFFQKKNFFNHRAETGRPRRPRNSRSEKDRAESFQRTRKTSGGAVGKFNTKKKRKQSSESSDSCDTGSSFESEENVITDEVSRKDIGCTGEHRPRRSSRHKQKISYGENISDGDDDDDDDDFEITPKKSSRRVPSDTSDDDIEEVYVDDRSVDVDNDQRETNEPENNGTEGSSSRRSTGSKKASQKETADKNVPQRRMKSAGDPEPNSLERHDPDFNDFDKLRNRDCFSPGQIWAMYRDIDTMPRSYARIEKVFPSEFKIQVTWLEPEATDKKMPISCGDFVFGATETMTDCGSMFSHAVSWDKGGRKDSFKIFPRKGETWALFKNWDKNSQCDSNSEAEYEFVETLSEYTEEAGIDVALLAKVKGFSSLFCQMVDQEGKSFRIPADELFRFSHRIPSFPLTGDEREDVPKGSFELDPAALPPNIPEIAIPEHLKEMAGDTGHDTLKPTRRPKCREAAADVKSDLSSESDDDCAHVASSGEAYEIPDPEFHNFDVDKSSDKFKINQVWALYSDEDALPRYYGLIRKITREPKFEVKLTWLEPSALPSDAIEWDDKDMLISCGKFRTQRRTSMHCCNSTGSFSHLVKTNSSPKNEISISPRNGEVWALYKNWTPEFRCSDLDKCVYEIAEVIDEDDLQKEVMVLERVDGYNSVFKARAKNDGSTLTMVITQAELLRFSHQIPAFRLTDERGGSLRGCLELDPAALPVYFFP 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7465091 7467931 - CmoCh08G011730.1 Cmo08g01173 387906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01173 946 Pfam Domain of unknown function (DUF3444) 718 924 IPR024593 -
Cmo08g01173 946 Pfam Domain of unknown function (DUF3444) 443 641 IPR024593 -
Cmo08g01173 946 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cmo08g01173 946 PRINTS DnaJ domain signature 87 102 IPR001623 -
Cmo08g01173 946 PRINTS DnaJ domain signature 103 123 IPR001623 -
Cmo08g01173 946 SMART dnaj_3 66 123 IPR001623 -
Cmo08g01173 946 Gene3D DnaJ domain 64 175 IPR036869 -
Cmo08g01173 946 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Cmo08g01173 946 Pfam DnaJ domain 67 128 IPR001623 -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 312 329 - -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 246 272 - -
Cmo08g01173 946 CDD DnaJ 67 120 IPR001623 -
Cmo08g01173 946 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 945 - -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 359 375 - -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 401 415 - -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 416 459 - -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 245 459 - -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 385 400 - -
Cmo08g01173 946 MobiDBLite consensus disorder prediction 297 311 - -
Cmo08g01173 946 SUPERFAMILY Chaperone J-domain 64 159 IPR036869 -
Cmo08g01173 946 PANTHER - 1 945 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01173 - - - bhj:120092937 1375.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01173 Cmo17g00292 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01173 Cmo-Chr8:7465091 Cmo11g01141 Cmo-Chr11:6441160 1.24E-38 dispersed
Cmo17g00292 Cmo-Chr17:1758544 Cmo08g01173 Cmo-Chr8:7465091 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01173 Cmo_Chr08 FPKM 13.698055 11.890056 11.964947 12.095182 9.098546 7.588286 10.993682 5.296422 7.190932 5.974319