Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01176 ATGGCGTCTGAAATGATTGTCGAATCAGGCTCGTCGATAATAGATTTTGGGATGGAGTTAGTCGCGGATCATACTTCGGTGGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGTGGTTGCATTGTTGTTGGTCATTTGTTAGAGGAAAACCGATGGATCAACGAGTCCATTACAGCCCTTGTCATTGGGTTGTGTACCGGCATCATCATATTGCTAACAACTAGAGGGAAAAGTTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATCTATCTCCTTCCGCCTATCATTTTCAATGCCGGTTTCCAGGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCCTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCTCTTGATCTTGGAGATTATCTTGCTATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGTACCTTACAGGTTCTTAATCAGGATGAGACCCCTCTCCTGTATAGCCTGGTTTTTGGGGAGGGTGTTGTAAATGATGCCACTTCTGTTGTGCTATTCAATGCAATCCAGAACTTTGATCTGTCTCACATGAATTCAAGCATCATTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACCGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTACTTTTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGTATTGTTATGTCTCACTATACATGGCATAACGTAACTGAAAGTTCCAGAGTTACTACAAAGCATGCTTTCGCCACTCTTTCTTTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCGGGGAAATCAATTGGGGTGAGCTCAATACTGTTGGGACTGGTTCTGGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCCGTTTCAATGGCACTTGCATACAATCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGCACAGTGGGATTCTGCTACCCCAACCAAAATACACAATGAGCATGCTGTCTTCGGAACCCTCATCCCCAAAATCCTTCACAGTCCCACTCCTCACCAATGACGACCCAAACAGCCATTCCCAATCCCAATCCCATTCCCATTCCCCTCTGGGGCTGTTCCTCAGAATCCCGGCCCATACGGTTCACCATTATTGGCGGAGATTCGACGACGCCTTCATGCGCCCTGTTTTTGGAGGGAGGGGCTTTGTGCCCTTCGTCCCTGGCTCCCCTACCGAAGACCCCAACCAACAATGGCAAACTGAAGGACCACTTGAAGCCGCCGTTGATGACAACAAAACCATTCTTATACAGACTCGATGGTAA 1656 43.96 MASEMIVESGSSIIDFGMELVADHTSVVSLNLFVALLCGCIVVGHLLEENRWINESITALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIILQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQVRPHPFTRQCNHDHQYHHSCSFQHSGILLPQPKYTMSMLSSEPSSPKSFTVPLLTNDDPNSHSQSQSHSHSPLGLFLRIPAHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPNQQWQTEGPLEAAVDDNKTILIQTRW 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7482903 7488855 - CmoCh08G011760.1 Cmo08g01176 387909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01176 551 PANTHER SODIUM/HYDROGEN EXCHANGER 436 530 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo08g01176 551 PANTHER SODIUM/HYDROGEN EXCHANGER 17 409 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo08g01176 551 MobiDBLite consensus disorder prediction 446 477 - -
Cmo08g01176 551 Gene3D - 150 201 - -
Cmo08g01176 551 PANTHER SODIUM/HYDROGEN EXCHANGER 3 436 530 - -
Cmo08g01176 551 PANTHER SODIUM/HYDROGEN EXCHANGER 3 17 409 - -
Cmo08g01176 551 Pfam Sodium/hydrogen exchanger family 32 406 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo08g01176 551 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo08g01176 551 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo08g01176 551 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo08g01176 551 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01176 Cmo-Chr8:7482903 Cmo10g01169 Cmo-Chr10:10438999 0 dispersed
Cmo11g01307 Cmo-Chr11:8965531 Cmo08g01176 Cmo-Chr8:7482903 0 transposed
Cmo17g01105 Cmo-Chr17:9077906 Cmo08g01176 Cmo-Chr8:7482903 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01176 - - cmos:111436756 963.755