Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01177 ATGTCTCTCAAGAGCATCATTCAAGATATGAGGTCCCGCTCCCGCCGCGTGGTGCAGGACGGCACGGCGCCGGAGCCAACGGACGGCCTCGTCCAGAGCTGCTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTTATGAGAATCGAGGCATCGGAGACTTCTTGGCCACGGAGGAAGAGTGTCGTCGCTTGCGCTGGAGTATGCCGGAGCTGGCGGGCCATCACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAAGTTAACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACTAATGCACTAAATGATGATGGTAAGTTTCTTCTTGCTGCTCGGAAATGCAAGCGACCGACCTACACAGACTATATTATCTCTTTACACGCCGAGGATTTGTCGAAAGGGAGCAGCACCTATGTCGGGAAGTTGAGATCTAATTTCCTAGGAACTAAGTTCACAATCTTCGACGGGCAACCGCCACATTCAGGAGCGAAGATCACAAAAAGTCGCTCCACGAGGCTTGTGAATTTGAAACAAGTTTCGCCCAAATTCCCTTCTGGGAACTATCCAGTTGCTCACATTTCGTATGAACTAAATGTATTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTGGCTCCGACACCGACCGAGCTCTCATTGAGCAATGTGGAACTGTTTCCATCGTTCCCGTTCTTAAGGTCGAAATCAAATGCAGATAGCTTGCTTGCTGAACCATTAGCTAGTCAGAAAGATGAAATGCTGGTGCTGAGAAACAAGACTCCCAGGTGGCACGAGCAGCTTCAATGCTGGTGTTTGAATTTTCATGGACGAGTTACGATTGCTTCCGTGAAAAATTTTCAACTTGTCGCTTCTTCGGAAACCGAACCTCCTTCACAAGAACAAGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACCATGGATTTTCGTTACCCGATCTCGACTTTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1161 48.66 MSLKSIIQDMRSRSRRVVQDGTAPEPTDGLVQSCWANMPQELLREVLMRIEASETSWPRRKSVVACAGVCRSWRAITKEIVKTPEVSGKLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKFPSGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVEPGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLAEPLASQKDEMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSETEPPSQEQEKIILQFGKVGKDLFTMDFRYPISTFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7495224 7497163 + CmoCh08G011770.1 Cmo08g01177 387910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01177 386 PANTHER TUBBY-RELATED 1 386 - -
Cmo08g01177 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cmo08g01177 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Cmo08g01177 386 MobiDBLite consensus disorder prediction 1 26 - -
Cmo08g01177 386 SUPERFAMILY F-box domain 33 78 IPR036047 GO:0005515
Cmo08g01177 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Cmo08g01177 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Cmo08g01177 386 Pfam Tub family 97 381 IPR000007 -
Cmo08g01177 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cmo08g01177 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cmo08g01177 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cmo08g01177 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cmo08g01177 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Cmo08g01177 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cmo08g01177 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Cmo08g01177 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Cmo08g01177 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01177 Cmo14g01689 CCT
Cmo08g01177 Cmo14g01689 ECH
Cmo08g01177 Cmo17g00296 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01177 Cmo-Chr8:7495224 Cmo16g00672 Cmo-Chr16:3330233 1.71E-153 dispersed
Cmo04g00614 Cmo-Chr4:3057913 Cmo08g01177 Cmo-Chr8:7495224 9.94E-132 transposed
Cmo16g00475 Cmo-Chr16:2271385 Cmo08g01177 Cmo-Chr8:7495224 6.92E-129 transposed
Cmo14g01689 Cmo-Chr14:13253699 Cmo08g01177 Cmo-Chr8:7495224 0 wgd
Cmo17g00296 Cmo-Chr17:1778045 Cmo08g01177 Cmo-Chr8:7495224 0 wgd
Cmo06g01463 Cmo-Chr6:10551013 Cmo08g01177 Cmo-Chr8:7495224 1.43E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10300 PF01167 Tub 1.70E-110 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01177 K19600 - csv:101203437 714.916