Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g01177 | ATGTCTCTCAAGAGCATCATTCAAGATATGAGGTCCCGCTCCCGCCGCGTGGTGCAGGACGGCACGGCGCCGGAGCCAACGGACGGCCTCGTCCAGAGCTGCTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTTATGAGAATCGAGGCATCGGAGACTTCTTGGCCACGGAGGAAGAGTGTCGTCGCTTGCGCTGGAGTATGCCGGAGCTGGCGGGCCATCACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAAGTTAACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACTAATGCACTAAATGATGATGGTAAGTTTCTTCTTGCTGCTCGGAAATGCAAGCGACCGACCTACACAGACTATATTATCTCTTTACACGCCGAGGATTTGTCGAAAGGGAGCAGCACCTATGTCGGGAAGTTGAGATCTAATTTCCTAGGAACTAAGTTCACAATCTTCGACGGGCAACCGCCACATTCAGGAGCGAAGATCACAAAAAGTCGCTCCACGAGGCTTGTGAATTTGAAACAAGTTTCGCCCAAATTCCCTTCTGGGAACTATCCAGTTGCTCACATTTCGTATGAACTAAATGTATTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTGGCTCCGACACCGACCGAGCTCTCATTGAGCAATGTGGAACTGTTTCCATCGTTCCCGTTCTTAAGGTCGAAATCAAATGCAGATAGCTTGCTTGCTGAACCATTAGCTAGTCAGAAAGATGAAATGCTGGTGCTGAGAAACAAGACTCCCAGGTGGCACGAGCAGCTTCAATGCTGGTGTTTGAATTTTCATGGACGAGTTACGATTGCTTCCGTGAAAAATTTTCAACTTGTCGCTTCTTCGGAAACCGAACCTCCTTCACAAGAACAAGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACCATGGATTTTCGTTACCCGATCTCGACTTTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA | 1161 | 48.66 | MSLKSIIQDMRSRSRRVVQDGTAPEPTDGLVQSCWANMPQELLREVLMRIEASETSWPRRKSVVACAGVCRSWRAITKEIVKTPEVSGKLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKFPSGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVEPGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLAEPLASQKDEMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSETEPPSQEQEKIILQFGKVGKDLFTMDFRYPISTFQAFAICLSSFDTKIACE | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7495224 | 7497163 | + | CmoCh08G011770.1 | Cmo08g01177 | 387910 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g01177 | 386 | PANTHER | TUBBY-RELATED | 1 | 386 | - | - | |
Cmo08g01177 | 386 | ProSitePatterns | Tub family signature 1. | 316 | 329 | IPR018066 | - | |
Cmo08g01177 | 386 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 386 | - | - | |
Cmo08g01177 | 386 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cmo08g01177 | 386 | SUPERFAMILY | F-box domain | 33 | 78 | IPR036047 | GO:0005515 | |
Cmo08g01177 | 386 | Pfam | F-box domain | 35 | 82 | IPR001810 | GO:0005515 | |
Cmo08g01177 | 386 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 386 | IPR025659 | - | |
Cmo08g01177 | 386 | Pfam | Tub family | 97 | 381 | IPR000007 | - | |
Cmo08g01177 | 386 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Cmo08g01177 | 386 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Cmo08g01177 | 386 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Cmo08g01177 | 386 | PRINTS | Tubby superfamily signature | 298 | 315 | IPR000007 | - | |
Cmo08g01177 | 386 | PRINTS | Tubby superfamily signature | 316 | 332 | IPR000007 | - | |
Cmo08g01177 | 386 | PRINTS | Tubby superfamily signature | 343 | 362 | IPR000007 | - | |
Cmo08g01177 | 386 | PRINTS | Tubby superfamily signature | 364 | 386 | IPR000007 | - | |
Cmo08g01177 | 386 | ProSitePatterns | Tub family signature 2. | 371 | 386 | IPR018066 | - | |
Cmo08g01177 | 386 | Gene3D | Tubby Protein; Chain A | 93 | 386 | IPR025659 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g01177 | Cmo14g01689 | CCT | |
Cmo08g01177 | Cmo14g01689 | ECH | |
Cmo08g01177 | Cmo17g00296 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g01177 | Cmo-Chr8:7495224 | Cmo16g00672 | Cmo-Chr16:3330233 | 1.71E-153 | dispersed | |
Cmo04g00614 | Cmo-Chr4:3057913 | Cmo08g01177 | Cmo-Chr8:7495224 | 9.94E-132 | transposed | |
Cmo16g00475 | Cmo-Chr16:2271385 | Cmo08g01177 | Cmo-Chr8:7495224 | 6.92E-129 | transposed | |
Cmo14g01689 | Cmo-Chr14:13253699 | Cmo08g01177 | Cmo-Chr8:7495224 | 0 | wgd | |
Cmo17g00296 | Cmo-Chr17:1778045 | Cmo08g01177 | Cmo-Chr8:7495224 | 0 | wgd | |
Cmo06g01463 | Cmo-Chr6:10551013 | Cmo08g01177 | Cmo-Chr8:7495224 | 1.43E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10300 | PF01167 | Tub | 1.70E-110 | CL0395 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g01177 | K19600 | - | csv:101203437 | 714.916 |