Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01181 ATGGCGAAACCCTCGAAACGACAGGTGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAATGAGGAGGAGGACGAGGAGGAGCTCGAAGCGGTAGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGAGGATTCAGATAACGATGCATCACCTGTCGAAAATGGCGAGGAAGAGGACGGAAGTAACGACGGGGATGATGATAAAGTCGATATTAGCAGGCGTGAAAAGGCCAGACTAAAAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTGGATGCACAAAATGCTGCAATTGATGCTGATATGAATAATAAGGGGAAGGGACGCTTGAAATATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGAGCATTCTTCTTCTCAAAAGAAAACGAAAGGAAGGGGTCGTCATGCATCAAAGATAACTGAAGAAGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTTTATCTGGGACTGGGAACACTCGTCTCCTTACACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGGTTAAATTGGCTCATTCGACTGTATGAGAATGGCATCAATGGAATCCTTGCAGATGAGATGGGGCTTGGCAAGACACTACAAACCATCTCTCTGTTGGGCTATCTTCACGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCACCAAAATCTACCCTGGGAAACTGGATGAATGAAATTCGTCGTTTTTGCCCTATCTTGCGAGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGAATATACGGGAAAATTTACTGGTAGCTGGGAAGTTTGATGTCTGTGTTACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAATACCAACTATCGTCTTCTAATCACTGGCACGCCACTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTTCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTCGATGAATGGTTTCAAATTTCTGGGGAGAATGATCAGCAGGAGGTTGTTCAACAACTTCACAAGGTCCTTCGACCTTTTCTTCTTCGGAGGCTGAAATCGGATGTTGAAAAAGGTTTACCACCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCACAGATGCAAAAGCAATACTATCGTGCTTTGCTCCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATAGCAATGCAGCTCCGGAAATGCTGTAACCACCCATATTTATTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACTGGAGATCATCTTATTACAAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGACTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTACTACTGTCGGATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCTTTCAACAAGCCAGGAAGTGAAAAATTTGTTTTCTTACTTTCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTCATTCTTTACGACAGTGACTGGAATCCTCAAGTTGATCTGCAAGCCCAAGATCGTGCTCATAGAATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTTATTGAAAGGGCTTACAAGAAACTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGATAGAATCATTGCAAAAGGAGAAGCAGCAACAGCGGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAGATGGATGAAAGTGGGGAGCTTCCTGACATGAACTGTCTAGTTTCTTTCTGTTTTCTTTCTAATATTCAAGTAGTTTTGTCTAATGCTTATGTGGTTTTGGCAGCTGCTGAATTGTATGATTTCGACGATGAGAAGGATGAAAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCGGAATCGGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAGGAGCCCAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAATTTTTCAATACACAAAGGTTGAGTGAACTATATGAAAAAGAAGTGCGGTATCTCATGCTAACACATCAAAAGAATCAGTTGAAAGATACAATAGATGTTGAGGAGACTGAAGATGTGGGTGATCCATTGACGGCCGAAGAGCTGGAAGAAAAAGAAAAACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAGTATGGGCGAAACGATATTAAAAGTATTGCTTTGGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCAAATGTCTTTAAAGAGAGATACAAGGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCAAGGATTTCTCGTAAGGATGAAATAATGAAAGCCATCGGCAAGAAACTGGATCGCTACAAAAATCCATGGTTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTACAACGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTACGGGAACTGGGACGAACTGAAAGCCGCATTTCGTACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACAACACAAGAACTTGCAAGGAGGTGCGATACCTTAATCCGGTTAGTCGAGAAGGAAAACCAGGAATATGATGAACGGGAAAGACAGGCCCGTAAAGAAAAGAAGCTTGCCAAGAGTATGACGCCATCAAAACGTGCCTTGGCTAGGCAGTCCGAGAGCCCAACTAACCTAAAGAAGCGGAAGCAATTATCTAAGGATGATTATGTGAACTCTGGTAAGAGGAGGAAGTGA 3315 41.93 MAKPSKRQVSSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEEDGSNDGDDDKVDISRREKARLKEMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKITEEEEDEEYLKEEEDGLSGTGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRNIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDESGELPDMNCLVSFCFLSNIQVVLSNAYVVLAAAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMLTHQKNQLKDTIDVEETEDVGDPLTAEELEEKEKLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIALEMEGKTEEEVERYANVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQSESPTNLKKRKQLSKDDYVNSGKRRK 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7509730 7517481 + CmoCh08G011810.1 Cmo08g01181 387914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01181 1104 Coils Coil 93 113 - -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 1052 1104 - -
Cmo08g01181 1104 Gene3D - 199 414 IPR038718 -
Cmo08g01181 1104 SUPERFAMILY Homeodomain-like 935 1057 IPR009057 -
Cmo08g01181 1104 Coils Coil 1037 1064 - -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 9 26 - -
Cmo08g01181 1104 Pfam SLIDE 937 1047 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cmo08g01181 1104 Gene3D - 419 711 IPR027417 -
Cmo08g01181 1104 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 1 96 - -
Cmo08g01181 1104 Coils Coil 22 42 - -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 1082 1104 - -
Cmo08g01181 1104 Gene3D iswi atpase 935 967 - -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 80 96 - -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 142 186 - -
Cmo08g01181 1104 CDD SANT 883 927 IPR001005 -
Cmo08g01181 1104 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Cmo08g01181 1104 SUPERFAMILY Homeodomain-like 883 933 IPR009057 -
Cmo08g01181 1104 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Cmo08g01181 1104 Gene3D ISWI, HAND domain 781 879 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cmo08g01181 1104 SMART ultradead3 194 386 IPR014001 -
Cmo08g01181 1104 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 752 1104 - -
Cmo08g01181 1104 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 728 - -
Cmo08g01181 1104 SMART sant 880 929 IPR001005 -
Cmo08g01181 1104 SMART sant 982 1043 IPR001005 -
Cmo08g01181 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 413 IPR027417 -
Cmo08g01181 1104 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Cmo08g01181 1104 SMART helicmild6 529 613 IPR001650 -
Cmo08g01181 1104 ProSiteProfiles SANT domain profile. 879 931 IPR017884 -
Cmo08g01181 1104 PANTHER SNF2/RAD54 HELICASE FAMILY 752 1104 - -
Cmo08g01181 1104 PANTHER SNF2/RAD54 HELICASE FAMILY 9 728 - -
Cmo08g01181 1104 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 792 882 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cmo08g01181 1104 CDD SF2_C_SNF 499 624 - -
Cmo08g01181 1104 Gene3D - 968 1071 - -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 27 42 - -
Cmo08g01181 1104 Pfam HAND 793 877 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cmo08g01181 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 694 IPR027417 -
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 53 79 - -
Cmo08g01181 1104 Gene3D - 880 934 - -
Cmo08g01181 1104 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Cmo08g01181 1104 MobiDBLite consensus disorder prediction 1052 1068 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01181 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 1961.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01493 Cmo-Chr3:10693669 Cmo08g01181 Cmo-Chr8:7509730 1.15E-111 dispersed
Cmo04g00837 Cmo-Chr4:4166756 Cmo08g01181 Cmo-Chr8:7509730 1.10E-26 dispersed
Cmo07g00026 Cmo-Chr7:157776 Cmo08g01181 Cmo-Chr8:7509730 6.86E-113 dispersed
Cmo08g00149 Cmo-Chr8:849055 Cmo08g01181 Cmo-Chr8:7509730 9.18E-115 dispersed
Cmo08g01181 Cmo-Chr8:7509730 Cmo16g00712 Cmo-Chr16:3550543 1.74E-138 dispersed
Cmo19g00112 Cmo-Chr19:655613 Cmo08g01181 Cmo-Chr8:7509730 1.51E-78 dispersed
Cmo08g01181 Cmo-Chr8:7509730 Cmo17g00241 Cmo-Chr17:1421492 9.31E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10301 PF00176 SNF2_N 9.90E-72 CL0023 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01181 Cmo_Chr08 FPKM 86.844887 90.976578 46.620956 49.15316 31.96417 31.288836 32.443951 66.955055 67.573174 76.800812