Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01189 ATGTTTGCTTCCAGTATGGATACTGTGAGGGACACAGCTAGAACTGCGGGAACAATGTTAATCCCAATGCGTTTTGTCTGGCCGTATGGCGGAAGAAGTGTATTTCTCAGTGGCTCTTTCACCAGGTGGTCGGAGCTTGTTCCTATGACGCCTATGGAGGGCTGTCCTACTGTTTTTCAGGCTATTTACAGCTTAACCCCTGGATATCACCAGTATAAATTTTTTGTTGATGGAGAATGGCGACATGACGAGCAGCAGACTTGTACTCCTGGTGAATATGGGATAGTGAACACTGTTCGCTTGCCTACAGAGCCTAGCTATGCTGCTCCACCTGCCAATCCAGAGATGACCCCTGGATCTAGCATGGATGTGGATACTGATACATTCCGACGCCTGGTCCGAATAAATGATGGATGGCTGTCAGAGGCTGTGCATAGTGTATCAGAGGCTGATCTGCAGTGCTCCCGTCACCGTATATCTGCATTCTTGTCCACACATACTGTTTACGAGTTGCTCCCAGAGTCGGGCAAGGGTATCCCAACAGCTCCTCTTTGGGATTTCAGCAAGGGGCAATTTGTTGGAGTTCTCAGTGCATCAGATTTTATTTTAATATTAAAAGAACTTGGGAAGCGTGGCTCAAACCTGACAGAGGAAGAGCTTGAAACACATACTATATCTGCTTGGAAAGAGGGTAAAGCATATTTGAACGGTCAAGTGGATGGGCAAGGAAGATTCTTGTCAAGACAATTCATTCACGCTGAACCATTCGATAATTTGAAGGATGTTGCTTTAAAGATATTGCAAAACCAGGTGGCTACAGTTCCCATAATCCATTCATCTGCAGAAGATGGTTCATTTCCACAGTTGTTGCATCTTGCTTCACTTTCTGGAATTCTAAAATGTATCTGCAGGTACTTTAGGCATTGTTCCAGCCTGTTGCCTGTGCTTCAACTACCAATTTTTGCGATTCCAGTAGGCACATGGGTCCCAAAAATTGGAGAATCGAATAGAAGGCCATTAGCTATGTTGAGACCTAGTGCTTCTCTTAGCTCAGCGTTAAACTTACTGATTCAAGCTCAAGTTAGTTCAATACCCATAGTTGACGACAATGATTCATTGCTGGATGTATATTGCCGAAGCGATATAACAGCTCTTGCAAAGGATAGAGCTTACACACACATCAATCTTGATGAAATGACCATTCATCAGGCATTGCAACTTGGACAAGATTCTTTTTCCCTTTATGAGCCACGGAGTCAACGATGTCAGATGTGTTTGCATTCCGACTCGTTGCATAAAGTGATGGATCGCTTGGCTAACCCAGGCGTTCGACGGCTTGTAATCGTGGAAGCTGGCAGCAAACGGGTAGAAGGGATAGTTTCACTAAGCGACATATTCAAGTTCTTGCTTGGTTAA 1416 44.56 MFASSMDTVRDTARTAGTMLIPMRFVWPYGGRSVFLSGSFTRWSELVPMTPMEGCPTVFQAIYSLTPGYHQYKFFVDGEWRHDEQQTCTPGEYGIVNTVRLPTEPSYAAPPANPEMTPGSSMDVDTDTFRRLVRINDGWLSEAVHSVSEADLQCSRHRISAFLSTHTVYELLPESGKGIPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNLTEEELETHTISAWKEGKAYLNGQVDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPIIHSSAEDGSFPQLLHLASLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNRRPLAMLRPSASLSSALNLLIQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTIHQALQLGQDSFSLYEPRSQRCQMCLHSDSLHKVMDRLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7556638 7562955 - CmoCh08G011890.1 Cmo08g01189 387922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01189 471 Pfam CBS domain 424 470 IPR000644 -
Cmo08g01189 471 Pfam CBS domain 337 383 IPR000644 -
Cmo08g01189 471 SMART cbs_1 339 387 IPR000644 -
Cmo08g01189 471 SMART cbs_1 421 470 IPR000644 -
Cmo08g01189 471 ProSiteProfiles CBS domain profile. 335 392 IPR000644 -
Cmo08g01189 471 SUPERFAMILY CBS-domain pair 157 308 IPR046342 -
Cmo08g01189 471 SUPERFAMILY CBS-domain pair 335 470 IPR046342 -
Cmo08g01189 471 Gene3D Immunoglobulins 18 101 IPR013783 -
Cmo08g01189 471 Pfam Glycogen recognition site of AMP-activated protein kinase 21 99 IPR032640 -
Cmo08g01189 471 ProSiteProfiles CBS domain profile. 418 471 IPR000644 -
Cmo08g01189 471 SUPERFAMILY E set domains 21 99 IPR014756 -
Cmo08g01189 471 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 178 471 - -
Cmo08g01189 471 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 177 - -
Cmo08g01189 471 CDD E_set_AMPKbeta_like_N 22 99 - -
Cmo08g01189 471 Gene3D - 319 471 IPR046342 -
Cmo08g01189 471 Gene3D - 148 312 IPR046342 -
Cmo08g01189 471 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 177 - -
Cmo08g01189 471 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 178 471 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01189 - - - csv:101215603 880.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01703 Cmo-Chr4:8628203 Cmo08g01189 Cmo-Chr8:7556638 2.62E-06 dispersed
Cmo08g01189 Cmo-Chr8:7556638 Cmo13g00419 Cmo-Chr13:5205366 1.19E-06 dispersed
Cmo08g01189 Cmo-Chr8:7556638 Cmo17g00301 Cmo-Chr17:1808513 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g332 . Blo12g00021 . Bda08g00284 Bpe04g01128 Bpe14g01135 . Bma05g01047 Cmo08g01189 . . . . . . . . . . . . . . . Cla06g00493 Cam06g0530 Cec06g0530 Cco06g0534 Clacu06g0514 Cmu06g0516 Cre06g1287 Cone14ag0773 Cone15ag0779 . . . . Chy11g01484 . Blo02g00514 . . Bda13g00180 Bpe05g00844 . . . Sed09g0226 . . Cma08g01216 . Car08g01087 Car17g00287 Cpe12g00265 Cpe17g00011 Bhi12g02085 Tan06g2644 Cmetu11g2330 . Hepe03g0116 . Lcy13g0190 . . . . . . . Lsi09g01414 . . Cme11g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004087 3 2 2 1 3 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 3 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01189 Cmo_Chr08 FPKM 10.508252 11.553381 17.654825 17.41715 29.353832 31.190853 28.3197 30.932058 33.592136 30.61529