Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01196 ATGTCTGGCGTTTGGGTGTTCAAAAACGGCGTCGTTCGTCTGGTGGAGGACGCCGGAGTGGATAAGGGGAATGGCGGGCAGAGGTCGACGTATCGCCGGAAAGTGCTGGTGTACAGTCCGACGGAGGAGGTGATGACGTCATATGCGGAGCTGGAACAGAAACTGATGGCGTTGGGTTGGGAACGTTATTACGACGATCCAGATCTGCTGCAATTTCACAAGAGATCGACGGTCCATCTCATTTCTCTACCGAAAGAATTCGCCAAGTTCAGATCCATGCACATGTACGACATCGTCGTCAAAAATCGAAACCATTTCGAAGTTAAAGATGCCTAA 336 50.6 MSGVWVFKNGVVRLVEDAGVDKGNGGQRSTYRRKVLVYSPTEEVMTSYAELEQKLMALGWERYYDDPDLLQFHKRSTVHLISLPKEFAKFRSMHMYDIVVKNRNHFEVKDA 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7607009 7607344 + CmoCh08G011960.1 Cmo08g01196 387929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01196 111 PANTHER FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 2 1 110 - -
Cmo08g01196 111 PANTHER FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1 1 110 IPR039274 GO:0009909
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01196 - - - csv:101216805 176.792
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01196 Cmo-Chr8:7607009 Cmo12g00239 Cmo-Chr12:1572171 1.66E-45 dispersed
Cmo20g00435 Cmo-Chr20:2038481 Cmo08g01196 Cmo-Chr8:7607009 1.93E-37 transposed
Cmo14g01662 Cmo-Chr14:13118785 Cmo08g01196 Cmo-Chr8:7607009 1.41E-44 wgd
Cmo17g00308 Cmo-Chr17:1872150 Cmo08g01196 Cmo-Chr8:7607009 8.44E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g316 . . . . . . . . Cmo08g01196 . . . . . . Cpe08g00191 . . . . . . . . . . . . . . . Cone1ag0636 . . . Lsi05g01534 Csa06g01524 Chy11g01501 Cme06g00726 . . . Bda13g00183 . . . . . . . . . Car08g01097 Car17g00293 . . . . . . . . . Cla05g00643 Cam05g0703 Cec05g0716 Cco05g0713 Clacu05g0698 Cmu05g0665 Cre05g0738 . Csa03g01457 Chy06g00696 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000363 4 3 1 4 4 4 7 4 4 5 4 4 6 4 4 7 4 7 8 4 4 4 4 4 2 4 4 7 4 2 131
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01196 Cmo_Chr08 FPKM 2.384765 2.398807 10.881441 11.628983 14.422945 13.468188 12.271332 4.097748 3.71531 3.351929