Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01213 ATGTCGAATGGATTTGACGCCGAAGGTGACAACGAGAAAAAGAAAATGGCCTTAGTAGGCGTCTCTTCTCTGTTCCTCGTGGCCATGGTCGTTGCCGTTACCGTTGGCGTTAACAACTCCTCTCACAAAGGTGAAGGTCTCGGCAACGGTCATGGTGACGGAGCCGGAGAAATTTCTTCATCGACAAAAGCAATTCAAACTATTTGTCGGCCAACCGATTACAAAGAAACATGCGAGGAGAGTTTAATGTCTGAAGGCAGTAACACAACTGACCCTAGAGAGCTTGTAAAAATCGGCTTCAAAGTTTGCATGGACCAACTTAACTCGGCGATTAGAAATTCCACCACGCTTCAAGCATTAGCCAAAGAACCAAGAGCCAACCAAGCCCTTCAGAATTGTCGCGAGCTTCTAGAATATGCTATCGACGATATAACCGATTCATTCAACCGAATCGGCACCTTTCAAATGGCCAAACTCGACAAATTCGTCGAGGATTTGTCTGTCTGGTTAAGTGGGGCCCTTACTTATGAACAAACATGTTTGGATGGTTTTGAAAACACCACCGGTGATGCCGGGGAACAAATGAAGAAGTTTTTAAAGTCAGCTCAAGAAATGACAAGTAACGGTCTTGCAATTGTAACTGAACTGAAGAACATGTTGGGATCGTTGCAAGGATCCAAGGCCGGGCGTCGGTTGTTGGCCGGCGATGAAGTGCCGTCGTGGGTTAGCGACGAAAAGAGGCGGCTGATGCAGGTGCCTACGGCAGCGATCACACCGAATGTGGTGGTGGCGCAAGACGGAAGTGGAAAATATAAGACGATTAATGAAGCGTTGGTTGAGGTACTGAAGAAGAGCAATATAACCTTTGTGATTTACGTTAAGGCTGGAATTTATAAGGAAACTGTTCTTATTCCTAAGGCTATGACTCATGTTACAATGTACGGTGATGGCCCGACCAAAACCGTCGTGTCTGGTAGTTTGAATTTCGTCGACGGCATTCAAACCTTCAAGACAGCAACATTTGCCGTTGTCGGAGCCAATTTCTTCTGTCGAGACATGGGGTTCGAGAATACCGCTGGTGCGACGAAACATCAAGCCGTGGCGCTTCGAGTCCAATCTGACAGATCAATTTTCTTCAACTGTCATATGGACGGCCACCAAGATACTCTCTACGCCCAAACTCACCGTCAATTTTACCGTGACTGCAAAGTCAGCGGCACCATTGACTTTGTTTTTGGGAACTCAGCCGCCGTCTTCCAAAACTGCAATTTGGTGGTGCGTAAGCCATTGGCTAACCAACAATGCATTGTCACGGCTCAAGGCCGGCTCGAGAACCGCGAACCGACAGGTCTTGTTTTCCAAAACTGCCATTTCATGGGCGACCCGGCTTACTTGCCATTCAAAGCCGTGAACAAAGCCTACTTGGGCCGTCCCTGGAAGCAATTTTCACGAACCATAATTATGGGTTCTGAAATTGACGATTTAATTCAGCCTGAGGGATGGCTGCCGTGGATGGGCGATTTTGGGCTGAACACATTGTTCTACGCCGAGTTTCAGAACAAAGGACCGGGAGCTGACCTGACCAATAGAGTGAAGTGGCAAGGAATTAAAACTCTTACGCCGCAACAGGCCGCCGATTTCACTCCCAAGATTTTTATCGACGGCGATGATTGGATTTTGAACACGGGAGTTCCGTACTCTCCGGGAATGATGTGA 1716 47.67 MSNGFDAEGDNEKKKMALVGVSSLFLVAMVVAVTVGVNNSSHKGEGLGNGHGDGAGEISSSTKAIQTICRPTDYKETCEESLMSEGSNTTDPRELVKIGFKVCMDQLNSAIRNSTTLQALAKEPRANQALQNCRELLEYAIDDITDSFNRIGTFQMAKLDKFVEDLSVWLSGALTYEQTCLDGFENTTGDAGEQMKKFLKSAQEMTSNGLAIVTELKNMLGSLQGSKAGRRLLAGDEVPSWVSDEKRRLMQVPTAAITPNVVVAQDGSGKYKTINEALVEVLKKSNITFVIYVKAGIYKETVLIPKAMTHVTMYGDGPTKTVVSGSLNFVDGIQTFKTATFAVVGANFFCRDMGFENTAGATKHQAVALRVQSDRSIFFNCHMDGHQDTLYAQTHRQFYRDCKVSGTIDFVFGNSAAVFQNCNLVVRKPLANQQCIVTAQGRLENREPTGLVFQNCHFMGDPAYLPFKAVNKAYLGRPWKQFSRTIIMGSEIDDLIQPEGWLPWMGDFGLNTLFYAEFQNKGPGADLTNRVKWQGIKTLTPQQAADFTPKIFIDGDDWILNTGVPYSPGMM 571
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 7701057 7702855 - CmoCh08G012130.1 Cmo08g01213 387946
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01213 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cmo08g01213 571 Pfam Plant invertase/pectin methylesterase inhibitor 64 212 IPR006501 GO:0004857
Cmo08g01213 571 SMART PMEI_2 60 212 IPR006501 GO:0004857
Cmo08g01213 571 Pfam Pectinesterase 260 556 IPR000070 GO:0030599|GO:0042545
Cmo08g01213 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 218 IPR035513 -
Cmo08g01213 571 CDD PMEI-like_3 67 216 - -
Cmo08g01213 571 PANTHER PECTINESTERASE 16 570 - -
Cmo08g01213 571 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Cmo08g01213 571 Gene3D - 254 570 IPR012334 -
Cmo08g01213 571 PANTHER PECTINESTERASE 16 570 - -
Cmo08g01213 571 SUPERFAMILY Pectin lyase-like 255 569 IPR011050 -
Cmo08g01213 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 216 IPR006501 GO:0004857
Cmo08g01213 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 216 IPR035513 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo06g01513 Cmo08g01213 CCT
Cmo08g01213 Cmo14g01648 CCT
Cmo08g01213 Cmo17g00328 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01213 Cmo-Chr8:7701057 Cmo06g01513 Cmo-Chr6:10795720 0 dispersed
Cmo13g00518 Cmo-Chr13:6084982 Cmo08g01213 Cmo-Chr8:7701057 9.98E-150 dispersed
Cmo14g01248 Cmo-Chr14:10533283 Cmo08g01213 Cmo-Chr8:7701057 4.35E-140 dispersed
Cmo04g01991 Cmo-Chr4:10400652 Cmo08g01213 Cmo-Chr8:7701057 1.89E-173 transposed
Cmo06g00010 Cmo-Chr6:86808 Cmo08g01213 Cmo-Chr8:7701057 2.27E-168 transposed
Cmo11g01246 Cmo-Chr11:7830333 Cmo08g01213 Cmo-Chr8:7701057 0 transposed
Cmo14g01648 Cmo-Chr14:13035160 Cmo08g01213 Cmo-Chr8:7701057 0 wgd
Cmo17g00328 Cmo-Chr17:1985349 Cmo08g01213 Cmo-Chr8:7701057 0 wgd
Cmo06g01530 Cmo-Chr6:10846792 Cmo08g01213 Cmo-Chr8:7701057 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01213 K01051 - csv:101221958 866.685