Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo08g01213 | ATGTCGAATGGATTTGACGCCGAAGGTGACAACGAGAAAAAGAAAATGGCCTTAGTAGGCGTCTCTTCTCTGTTCCTCGTGGCCATGGTCGTTGCCGTTACCGTTGGCGTTAACAACTCCTCTCACAAAGGTGAAGGTCTCGGCAACGGTCATGGTGACGGAGCCGGAGAAATTTCTTCATCGACAAAAGCAATTCAAACTATTTGTCGGCCAACCGATTACAAAGAAACATGCGAGGAGAGTTTAATGTCTGAAGGCAGTAACACAACTGACCCTAGAGAGCTTGTAAAAATCGGCTTCAAAGTTTGCATGGACCAACTTAACTCGGCGATTAGAAATTCCACCACGCTTCAAGCATTAGCCAAAGAACCAAGAGCCAACCAAGCCCTTCAGAATTGTCGCGAGCTTCTAGAATATGCTATCGACGATATAACCGATTCATTCAACCGAATCGGCACCTTTCAAATGGCCAAACTCGACAAATTCGTCGAGGATTTGTCTGTCTGGTTAAGTGGGGCCCTTACTTATGAACAAACATGTTTGGATGGTTTTGAAAACACCACCGGTGATGCCGGGGAACAAATGAAGAAGTTTTTAAAGTCAGCTCAAGAAATGACAAGTAACGGTCTTGCAATTGTAACTGAACTGAAGAACATGTTGGGATCGTTGCAAGGATCCAAGGCCGGGCGTCGGTTGTTGGCCGGCGATGAAGTGCCGTCGTGGGTTAGCGACGAAAAGAGGCGGCTGATGCAGGTGCCTACGGCAGCGATCACACCGAATGTGGTGGTGGCGCAAGACGGAAGTGGAAAATATAAGACGATTAATGAAGCGTTGGTTGAGGTACTGAAGAAGAGCAATATAACCTTTGTGATTTACGTTAAGGCTGGAATTTATAAGGAAACTGTTCTTATTCCTAAGGCTATGACTCATGTTACAATGTACGGTGATGGCCCGACCAAAACCGTCGTGTCTGGTAGTTTGAATTTCGTCGACGGCATTCAAACCTTCAAGACAGCAACATTTGCCGTTGTCGGAGCCAATTTCTTCTGTCGAGACATGGGGTTCGAGAATACCGCTGGTGCGACGAAACATCAAGCCGTGGCGCTTCGAGTCCAATCTGACAGATCAATTTTCTTCAACTGTCATATGGACGGCCACCAAGATACTCTCTACGCCCAAACTCACCGTCAATTTTACCGTGACTGCAAAGTCAGCGGCACCATTGACTTTGTTTTTGGGAACTCAGCCGCCGTCTTCCAAAACTGCAATTTGGTGGTGCGTAAGCCATTGGCTAACCAACAATGCATTGTCACGGCTCAAGGCCGGCTCGAGAACCGCGAACCGACAGGTCTTGTTTTCCAAAACTGCCATTTCATGGGCGACCCGGCTTACTTGCCATTCAAAGCCGTGAACAAAGCCTACTTGGGCCGTCCCTGGAAGCAATTTTCACGAACCATAATTATGGGTTCTGAAATTGACGATTTAATTCAGCCTGAGGGATGGCTGCCGTGGATGGGCGATTTTGGGCTGAACACATTGTTCTACGCCGAGTTTCAGAACAAAGGACCGGGAGCTGACCTGACCAATAGAGTGAAGTGGCAAGGAATTAAAACTCTTACGCCGCAACAGGCCGCCGATTTCACTCCCAAGATTTTTATCGACGGCGATGATTGGATTTTGAACACGGGAGTTCCGTACTCTCCGGGAATGATGTGA | 1716 | 47.67 | MSNGFDAEGDNEKKKMALVGVSSLFLVAMVVAVTVGVNNSSHKGEGLGNGHGDGAGEISSSTKAIQTICRPTDYKETCEESLMSEGSNTTDPRELVKIGFKVCMDQLNSAIRNSTTLQALAKEPRANQALQNCRELLEYAIDDITDSFNRIGTFQMAKLDKFVEDLSVWLSGALTYEQTCLDGFENTTGDAGEQMKKFLKSAQEMTSNGLAIVTELKNMLGSLQGSKAGRRLLAGDEVPSWVSDEKRRLMQVPTAAITPNVVVAQDGSGKYKTINEALVEVLKKSNITFVIYVKAGIYKETVLIPKAMTHVTMYGDGPTKTVVSGSLNFVDGIQTFKTATFAVVGANFFCRDMGFENTAGATKHQAVALRVQSDRSIFFNCHMDGHQDTLYAQTHRQFYRDCKVSGTIDFVFGNSAAVFQNCNLVVRKPLANQQCIVTAQGRLENREPTGLVFQNCHFMGDPAYLPFKAVNKAYLGRPWKQFSRTIIMGSEIDDLIQPEGWLPWMGDFGLNTLFYAEFQNKGPGADLTNRVKWQGIKTLTPQQAADFTPKIFIDGDDWILNTGVPYSPGMM | 571 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7701057 | 7702855 | - | CmoCh08G012130.1 | Cmo08g01213 | 387946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo08g01213 | 571 | ProSitePatterns | Pectinesterase signature 2. | 404 | 413 | IPR033131 | - | |
| Cmo08g01213 | 571 | Pfam | Plant invertase/pectin methylesterase inhibitor | 64 | 212 | IPR006501 | GO:0004857 | |
| Cmo08g01213 | 571 | SMART | PMEI_2 | 60 | 212 | IPR006501 | GO:0004857 | |
| Cmo08g01213 | 571 | Pfam | Pectinesterase | 260 | 556 | IPR000070 | GO:0030599|GO:0042545 | |
| Cmo08g01213 | 571 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 59 | 218 | IPR035513 | - | |
| Cmo08g01213 | 571 | CDD | PMEI-like_3 | 67 | 216 | - | - | |
| Cmo08g01213 | 571 | PANTHER | PECTINESTERASE | 16 | 570 | - | - | |
| Cmo08g01213 | 571 | ProSitePatterns | Pectinesterase signature 1. | 285 | 304 | IPR018040 | - | |
| Cmo08g01213 | 571 | Gene3D | - | 254 | 570 | IPR012334 | - | |
| Cmo08g01213 | 571 | PANTHER | PECTINESTERASE | 16 | 570 | - | - | |
| Cmo08g01213 | 571 | SUPERFAMILY | Pectin lyase-like | 255 | 569 | IPR011050 | - | |
| Cmo08g01213 | 571 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 61 | 216 | IPR006501 | GO:0004857 | |
| Cmo08g01213 | 571 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 63 | 216 | IPR035513 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo06g01513 | Cmo08g01213 | CCT | |
| Cmo08g01213 | Cmo14g01648 | CCT | |
| Cmo08g01213 | Cmo17g00328 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo08g01213 | Cmo-Chr8:7701057 | Cmo06g01513 | Cmo-Chr6:10795720 | 0 | dispersed | |
| Cmo13g00518 | Cmo-Chr13:6084982 | Cmo08g01213 | Cmo-Chr8:7701057 | 9.98E-150 | dispersed | |
| Cmo14g01248 | Cmo-Chr14:10533283 | Cmo08g01213 | Cmo-Chr8:7701057 | 4.35E-140 | dispersed | |
| Cmo04g01991 | Cmo-Chr4:10400652 | Cmo08g01213 | Cmo-Chr8:7701057 | 1.89E-173 | transposed | |
| Cmo06g00010 | Cmo-Chr6:86808 | Cmo08g01213 | Cmo-Chr8:7701057 | 2.27E-168 | transposed | |
| Cmo11g01246 | Cmo-Chr11:7830333 | Cmo08g01213 | Cmo-Chr8:7701057 | 0 | transposed | |
| Cmo14g01648 | Cmo-Chr14:13035160 | Cmo08g01213 | Cmo-Chr8:7701057 | 0 | wgd | |
| Cmo17g00328 | Cmo-Chr17:1985349 | Cmo08g01213 | Cmo-Chr8:7701057 | 0 | wgd | |
| Cmo06g01530 | Cmo-Chr6:10846792 | Cmo08g01213 | Cmo-Chr8:7701057 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo08g01213 | K01051 | - | csv:101221958 | 866.685 |