Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01218 ATGGCTGAGTGTCTCAGTCTCCAATTCGCTCATCGTTCTCTCCCTCTCTGGGATTCCGCTTCGACTCCAACTCCAATCCGCTCTAGATTTCAGGTTCGGTTTCTCTCTTTCTGTATACCGCACTCTCTCCTTTGTTCCGGATCCGGCTCCGGCTCCGGCTCCAGACTGGTTTTTCTAAGTAACCTCCGGAACATATATCCGATCAACGCGTCTTTGAACCGCGGAATGTCGAATTCCATAGGGAACAAAGAAGAACCGAAGGAACTTCGAGATGAGTCCGATTTTGAATCCGTCTTCTCCAACGATTCTTACATTTCTGTTTGTGGCTTTGGCTCTCTTCTCTCTGAGAGGAGCGCGCGAAGTACCTTTCCTGAACTGATCAACTTTAGAGTGGCGAGATTGAACGGCTTCAGGCGCCTTTTCGGAAATGTAGCTCCTGTATTCTTCGAGCGCGGCATAGCTAAACCTGAAACCAAGGAGATTTCAAGCTTGTGTGCGGAGCCTTGCGAAGGAGAAACTATCATCGTTACGGTTTTCGAGATTAAGAAATCTGAGATTCCAGCGTTTATACAGAGAGAGATTGAGTTTCGATTTCTAGCCGTTCTACCTGAAACATTAGATGGAAAGTTATATGATAAACCAGCGGTTCTTTGCTCTCGATCCACTGATGAGGAATTCTTCCGAGTGAGATGCAAAGGAAATGAAGACGTTTATTTTCAGCATTATGGTCGTCATAATATTGATAAGATCTGGAGAGATGATATCTTACCCTGTCGCGTCTATCTTCGACACTGTGTTTTAGCTGCAAAAAATCTGGGCGACACAGCTTATAACAACTTTCTGGATCACACTTTCCTTGGAGATCGTAGAACAACCATCCGTGAATATTTGGCCACTAATGGTTCGGGCATTATGGAAGAGGAGCCTCCAGAATCCCTCAAGTTTCGATATGGCGGTTGA 960 45.62 MAECLSLQFAHRSLPLWDSASTPTPIRSRFQVRFLSFCIPHSLLCSGSGSGSGSRLVFLSNLRNIYPINASLNRGMSNSIGNKEEPKELRDESDFESVFSNDSYISVCGFGSLLSERSARSTFPELINFRVARLNGFRRLFGNVAPVFFERGIAKPETKEISSLCAEPCEGETIIVTVFEIKKSEIPAFIQREIEFRFLAVLPETLDGKLYDKPAVLCSRSTDEEFFRVRCKGNEDVYFQHYGRHNIDKIWRDDILPCRVYLRHCVLAAKNLGDTAYNNFLDHTFLGDRRTTIREYLATNGSGIMEEEPPESLKFRYGG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7731238 7736102 + CmoCh08G012180.1 Cmo08g01218 387951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01218 319 PANTHER OS05G0358400 PROTEIN 73 319 - -
Cmo08g01218 319 PANTHER OS05G0358400 PROTEIN 73 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01218 - - - cpep:111778438 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00335 Cmo-Chr17:2024418 Cmo08g01218 Cmo-Chr8:7731238 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g141 . . . . Bpe04g01100 . Bma04g01147 . Cmo08g01218 . . . . . . . . . . . . . . . Cla06g00456 Cam06g0486 Cec06g0490 Cco06g0489 Clacu06g0473 Cmu06g0474 Cre06g1247 Cone14ag0745 . . . . Csa06g01775 Chy11g01537 . . . . . . . . . . . . Cma08g01246 Cma17g00347 Car08g01120 . . Cpe17g00041 Bhi12g02027 . . Lac11g0890 . . Lcy12g0769 . . . . . . . . . . Cme11g02043
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003761 0 5 0 1 1 1 2 1 1 3 1 1 1 3 3 2 1 1 2 1 3 1 1 1 1 1 1 2 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01218 Cmo_Chr08 FPKM 23.902039 27.391266 26.199287 26.562778 17.792969 20.022907 18.471813 35.479977 32.444981 35.186653