Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01220 ATGCAAACCGGTGGGATGGAGGCGGCGGCGGTGGCGACACTGGACTGCTGGAAGGGAGGAGGATACGGCGGGAAGAAGAAGAAGTGGAGCGCTTTCTCCCCGCCTCTCTCTCCCGTTCTGTGCTGCCACCACCGTCGCGGACACGCCGCTGCAGCCCCTAGCAAGTTTGCGCCGACTTCTCACTCTCTCGTTGTTACTGTAGCTTCAGCCCCTACAATGGTGGCGAAGAGCCAGGAAAACCGTCAACCCAAAAACAGGAGGCAAATTTCAGGCAACAAGAGTTCCTCGCATGGTTCCGCTTCGAAGAAACCGAAGTTCGTAAATGACAAGCCCTCGAAGTCCCATGGCCTGGGAACTGTTGGTAAACCCTTCAAATCGAAGGTTGAAAAATCAGAAGCTAAAAAGGAGCCAATTACGAAGCGAGAACATCGCCTCCAAGCTAAGGAACTTGCAGAGGCTAGGAAGAAGAAAAGGAAACGACATTATGATTTGGAACATGAGCTCGCACATCTATGGGAGAAAATGAGGGTTCGAAATATCACCAAAGAAGATAGATCCAAATGGGTAAGTAAAGCATTAGAAAACATGAAGGGGAAGATCCCTGAAATTGCAGGTTCCCATGTGTCGTCTCGTGTGCTTCAGACTTGTGTTAAACACTGCACAGATGCCGAGAGAGAGGCAGTGTTTGAGGAACTTAAGCCTCATTTTCTCACTCTTGCTTGCAACACTTACGCAGTTCATCTAGTGAAGAAAATGTTAGATAATGCCTCGAAAAAGCAGCTGGCTGGGTTTATCTCCTCTCTACATGGCCATGTAGCTTCTCTTCTTCGTCACATGGTTGGATCTTTAGTTGTTGAACATGCATACCATTTAGCGAATGCAGCTCAGAAACAAACACTTCTATTGGAACTTTATTCGGTGGAACTCCAGCTATTTAAGGATCTCGTCTCGATGAAAGAAAGCAGGCTAGTGGATGTAATTTCAAAATTGGACATTAAAAAAGCTTCGGTCTCGCGACACATGACATCAGTAATTCAACCTATTTTGGAAAAGGGGATAGTTGACCACTCTATTATACATAGGGTTCTGATGGAATACTTTACCATTGCTGATAAGACATCTGCCGCAGATGTAATCCAACATTTGTCCAGTTCACTTCTTGTTCGAATGATTCACACTAAAGATGGATCAAGGATCGGTGTACTTTGCATAAAACATGGGAGTGCAAAGGAAAGAAAGAAAATCGTCAAGGGAATGAAAGGCCATGTGAAGAAGATAGCACACGAACAATATGCGGTTATGGTTCTTGTGTCCATTATCTCGGTTGTCGATGATACAAAGCTGATTAGGAAGATTATTATTAACGAGCTCGAGAAAGATTTGAAGGAGCTTATTTTGGATAAGAATGGAAGACGTGTAGTACTGCAACTACTGCGTCCCAATTGTTCGCGCTACTTCAGTCCCGATGATCTTGCTTCTTTAAATTTATCAATACCTTCTCTTTGCAACAAGTCCGAGTCAGGAGTCGATAGAGCAGAAGAGAAGGCTGATAGTGACATGGGCGAAACGGAAGGTGAGGAGGTTGATGGAGGTGAGGTTTCTGCCGAGGGCTCTGAAGCTGTAGAGGGTGGTAAAAAAGATCCTCTTATCCGAAGACATGAGTTGTTGGTGGATAGCGGGCTTGCCGAGAAGCTTGTTGATGTATGCGTCAACAATGCTGGGGAAATACTAAGGTCAAATTTCGGCCGAGAAGTAATGTACGAGGTTACGACGGGGGGTGCCGATGACGTTCTTCAATCGAAATTGGGAGAAAAGCTGAGTGGTTTGTATGAAGCTATAGCTTCACTTGCAGCAGAGCCTAAATCTGAAGACGCAGCCGCAGGCGATGAGCATGTCCTTGAAAATTTCCACTCTAGTAGGACAATAAGAAAGCTTATCTTGGACTGCCCTGCCTTTGCCCTCACTTTGTGGACCACAGCACTTGAAGGGAAATCCAAATTGTGGGCTCAAGGTCACAGTTGTAAGATTGTCCAAGCTTTCCTGGAATCCACGGACTCAAAGGTACGTGAAATTTCAAGAGTAGAGTTACAGTCCTTGATTGACGAAGGGTTACTCAAAATCCCAGACACCAAGCAGTCTGCCGACAAAAGCTGA 2154 45.78 MQTGGMEAAAVATLDCWKGGGYGGKKKKWSAFSPPLSPVLCCHHRRGHAAAAPSKFAPTSHSLVVTVASAPTMVAKSQENRQPKNRRQISGNKSSSHGSASKKPKFVNDKPSKSHGLGTVGKPFKSKVEKSEAKKEPITKREHRLQAKELAEARKKKRKRHYDLEHELAHLWEKMRVRNITKEDRSKWVSKALENMKGKIPEIAGSHVSSRVLQTCVKHCTDAEREAVFEELKPHFLTLACNTYAVHLVKKMLDNASKKQLAGFISSLHGHVASLLRHMVGSLVVEHAYHLANAAQKQTLLLELYSVELQLFKDLVSMKESRLVDVISKLDIKKASVSRHMTSVIQPILEKGIVDHSIIHRVLMEYFTIADKTSAADVIQHLSSSLLVRMIHTKDGSRIGVLCIKHGSAKERKKIVKGMKGHVKKIAHEQYAVMVLVSIISVVDDTKLIRKIIINELEKDLKELILDKNGRRVVLQLLRPNCSRYFSPDDLASLNLSIPSLCNKSESGVDRAEEKADSDMGETEGEEVDGGEVSAEGSEAVEGGKKDPLIRRHELLVDSGLAEKLVDVCVNNAGEILRSNFGREVMYEVTTGGADDVLQSKLGEKLSGLYEAIASLAAEPKSEDAAAGDEHVLENFHSSRTIRKLILDCPAFALTLWTTALEGKSKLWAQGHSCKIVQAFLESTDSKVREISRVELQSLIDEGLLKIPDTKQSADKS 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7744913 7751526 - CmoCh08G012200.1 Cmo08g01220 387953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01220 717 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 173 519 IPR033133 GO:0003723
Cmo08g01220 717 MobiDBLite consensus disorder prediction 73 102 - -
Cmo08g01220 717 MobiDBLite consensus disorder prediction 519 533 - -
Cmo08g01220 717 SMART pum_5 418 455 IPR001313 GO:0003723
Cmo08g01220 717 SMART pum_5 195 230 IPR001313 GO:0003723
Cmo08g01220 717 SMART pum_5 382 417 IPR001313 GO:0003723
Cmo08g01220 717 SMART pum_5 267 302 IPR001313 GO:0003723
Cmo08g01220 717 SMART pum_5 231 266 IPR001313 GO:0003723
Cmo08g01220 717 SMART pum_5 456 493 IPR001313 GO:0003723
Cmo08g01220 717 MobiDBLite consensus disorder prediction 73 146 - -
Cmo08g01220 717 PANTHER UNCHARACTERIZED 76 711 IPR040059 GO:0003723
Cmo08g01220 717 MobiDBLite consensus disorder prediction 507 544 - -
Cmo08g01220 717 Pfam Pumilio-family RNA binding repeat 210 232 IPR001313 GO:0003723
Cmo08g01220 717 Pfam Pumilio-family RNA binding repeat 235 261 IPR001313 GO:0003723
Cmo08g01220 717 Pfam Pumilio-family RNA binding repeat 271 304 IPR001313 GO:0003723
Cmo08g01220 717 Pfam CPL (NUC119) domain 543 646 IPR012959 GO:0003723
Cmo08g01220 717 ProSiteProfiles Pumilio RNA-binding repeat profile. 267 303 IPR001313 GO:0003723
Cmo08g01220 717 SUPERFAMILY ARM repeat 179 488 IPR016024 -
Cmo08g01220 717 Coils Coil 140 160 - -
Cmo08g01220 717 ProSiteProfiles Pumilio RNA-binding repeat profile. 231 266 IPR001313 GO:0003723
Cmo08g01220 717 Gene3D - 167 515 IPR011989 -
Cmo08g01220 717 MobiDBLite consensus disorder prediction 125 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01220 K14844 PUF6; pumilio homology domain family member 6 - csv:101210633 1003.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01220 Cmo-Chr8:7744913 Cmo14g01207 Cmo-Chr14:10288337 5.29E-17 dispersed
Cmo08g01220 Cmo-Chr8:7744913 Cmo04g01244 Cmo-Chr4:6304144 6.02E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01220 Cmo_Chr08 FPKM 0.613165 0.895325 0.414711 0.629326 1.134074 0.289418 1.094222 0.813108 0.918147 1.142492