Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g01225 | ATGGATCTAAGCCACATGAAGGGATCGATACCGACGCCGACTTCAATTTCAGATAGAAAATCCACTGAAATGGTTTCTGATCAGTTCCCGGCGGGTCTTCGTGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGTAATCGGGCTGAGATCGCATTATCCATGCTTCGTGAGAACAAAAACGGGTTTGATATTGTGTTAAGTGACGTGCATATGCCAGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGGTTGGAGATGGATTTGCCCGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGAATTGAAGCGCTCAGGAACATATGGCAACATGTAGTTCGGAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGACGATGGCGATCGAGAGAAAAATGCATCTGAAGGTGCTAACTATTCTTCTTCAGTATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATACAGAAGAAGAGGCCGAGGAGAGGGACGATACGTCGACTTTAAAGAAGCCTAGGGTGGTATGGTCGGTTGAGCTCCATCAACAGTTTGTCGCCGCAGTTAAACAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAACGTTCCGGGGCTTACTCGAGAAAATGTTGCCAGTCACCTCCAGAAATATCGGTTATATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACTCCAATGTAATTTGAACAATTCTTTTATGAACCCTCAAGATCCACCTTTTGGGCCAATGGCTTCATTCAATGGAATTGATCTTCGGACACTTTCGGTCACTGGCCATCTCTCGCCTCAAAGCCTTGCTGCACTCCAAGCAACCGAATTTCGAAGGCCTGCTACAGCGAAATCTAGCATGTCGATGGCCCTTGTTGATCAGAACAACCTATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACGCCACACCTAAACAACAGTAAACCAATAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCATTATGCACCCTTCTGTGCAGACTCAAGGGAACATAAACATGCCACTCAATATCAAGACAGAACATGGTGGAACTCAACTAATGCATCATTTGTCCCATCAGCAAACTGGAGGACAGGCTTTAAGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCGTCGTTTCCGATCATATCAGGTAGCATTACGAGTCGAAATGGGACTGCTGATAGTACCCAAGGACCTGGATATAACCTAGTTTCGCCAGCATCCTTGATGATGAACTTTCCAATGAACCAACTCACAGAATTGTCAAACAATTTTTCTCTTCCGAGTGATTCGACAGTATCTACCTTAACCTGTAAAGGGGTGTTTCAAGAAGAGATTAGTTCAGATCTACATGGGTCGGACGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAGGCAGCTTGGCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATGTCTCACCTTCAACTTTGATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCATAATTCATCCTCTGCTGGAAAGACTATCTTTTCCTTTTCGGATGCAACTCAACCCGAGAATGCGCAGAGTAATGCCGAGAAGTTGCCTCTTGATCCCGGGGACGTCAAACCTCAGAGAATCCCCGATGCAAGCTATGAAACCGACCTCTTATCTGAGAACTTTGGCCAGGATGAACTTCTCAGTGTCTTCCTCAAACAAGAACAACAAGGAGACAACGGATCGGTCGACTTTAGCGGTTACCAAACGGAAAATATTTGTGTTTAG | 2019 | 44.53 | MDLSHMKGSIPTPTSISDRKSTEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREKNASEGANYSSSVYEGSWNSSKRRRDTEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVKQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSLQCNLNNSFMNPQDPPFGPMASFNGIDLRTLSVTGHLSPQSLAALQATEFRRPATAKSSMSMALVDQNNLFSFENPKLRFVEDQTPHLNNSKPINLFHGIPTKMEPKQLAIMHPSVQTQGNINMPLNIKTEHGGTQLMHHLSHQQTGGQALSNSPASHLPRISSSFPIISGSITSRNGTADSTQGPGYNLVSPASLMMNFPMNQLTELSNNFSLPSDSTVSTLTCKGVFQEEISSDLHGSDGLMSSYDVFSDLHLQKSHDWDSQNVGSLAFGTSHHGNFIQDSFDVSPSTLIHHGFPSSQTNGQNHNSSSAGKTIFSFSDATQPENAQSNAEKLPLDPGDVKPQRIPDASYETDLLSENFGQDELLSVFLKQEQQGDNGSVDFSGYQTENICV | 672 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7770459 | 7774205 | + | CmoCh08G012250.1 | Cmo08g01225 | 387958 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 570 | 625 | - | - | |
Cmo08g01225 | 672 | CDD | REC_typeB_ARR-like | 35 | 149 | - | - | |
Cmo08g01225 | 672 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 639 | - | - | |
Cmo08g01225 | 672 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 213 | 266 | IPR006447 | GO:0003677 | |
Cmo08g01225 | 672 | Gene3D | - | 210 | 272 | - | - | |
Cmo08g01225 | 672 | Pfam | Response regulator receiver domain | 35 | 143 | IPR001789 | GO:0000160 | |
Cmo08g01225 | 672 | SUPERFAMILY | CheY-like | 32 | 156 | IPR011006 | - | |
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Cmo08g01225 | 672 | ProSiteProfiles | Response regulatory domain profile. | 34 | 149 | IPR001789 | GO:0000160 | |
Cmo08g01225 | 672 | SMART | REC_2 | 33 | 145 | IPR001789 | GO:0000160 | |
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 570 | 609 | - | - | |
Cmo08g01225 | 672 | Gene3D | - | 33 | 166 | - | - | |
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 175 | 189 | - | - | |
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 156 | 210 | - | - | |
Cmo08g01225 | 672 | PIRSF | RR_ARR_type-B | 14 | 663 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 190 | 210 | - | - | |
Cmo08g01225 | 672 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 212 | 269 | IPR017930 | - | |
Cmo08g01225 | 672 | SUPERFAMILY | Homeodomain-like | 210 | 270 | IPR009057 | - | |
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo08g01225 | 672 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 639 | IPR045279 | GO:0009736 | |
Cmo08g01225 | 672 | Pfam | Myb-like DNA-binding domain | 215 | 265 | IPR001005 | - | |
Cmo08g01225 | 672 | MobiDBLite | consensus disorder prediction | 156 | 174 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g01225 | Cmo14g01636 | CCT | |
Cmo08g01225 | Cmo14g01636 | ECH | |
Cmo08g01225 | Cmo17g00339 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00070 | Cmo-Chr5:259045 | Cmo08g01225 | Cmo-Chr8:7770459 | 2.94E-97 | dispersed | |
Cmo08g01225 | Cmo-Chr8:7770459 | Cmo09g00426 | Cmo-Chr9:1898549 | 2.37E-104 | dispersed | |
Cmo12g00037 | Cmo-Chr12:209888 | Cmo08g01225 | Cmo-Chr8:7770459 | 2.46E-89 | dispersed | |
Cmo16g00157 | Cmo-Chr16:712656 | Cmo08g01225 | Cmo-Chr8:7770459 | 2.48E-43 | dispersed | |
Cmo14g01636 | Cmo-Chr14:12981700 | Cmo08g01225 | Cmo-Chr8:7770459 | 0 | wgd | |
Cmo17g00339 | Cmo-Chr17:2056494 | Cmo08g01225 | Cmo-Chr8:7770459 | 0 | wgd | |
Cmo06g01548 | Cmo-Chr6:10900168 | Cmo08g01225 | Cmo-Chr8:7770459 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10304 | PF00072 | Response_reg | 7.70E-22 | CL0304 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g01225 | - | K14491 | csv:101210138 | 1113.21 |