Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01225 ATGGATCTAAGCCACATGAAGGGATCGATACCGACGCCGACTTCAATTTCAGATAGAAAATCCACTGAAATGGTTTCTGATCAGTTCCCGGCGGGTCTTCGTGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGTAATCGGGCTGAGATCGCATTATCCATGCTTCGTGAGAACAAAAACGGGTTTGATATTGTGTTAAGTGACGTGCATATGCCAGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGGTTGGAGATGGATTTGCCCGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGAATTGAAGCGCTCAGGAACATATGGCAACATGTAGTTCGGAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGACGATGGCGATCGAGAGAAAAATGCATCTGAAGGTGCTAACTATTCTTCTTCAGTATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATACAGAAGAAGAGGCCGAGGAGAGGGACGATACGTCGACTTTAAAGAAGCCTAGGGTGGTATGGTCGGTTGAGCTCCATCAACAGTTTGTCGCCGCAGTTAAACAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAACGTTCCGGGGCTTACTCGAGAAAATGTTGCCAGTCACCTCCAGAAATATCGGTTATATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACTCCAATGTAATTTGAACAATTCTTTTATGAACCCTCAAGATCCACCTTTTGGGCCAATGGCTTCATTCAATGGAATTGATCTTCGGACACTTTCGGTCACTGGCCATCTCTCGCCTCAAAGCCTTGCTGCACTCCAAGCAACCGAATTTCGAAGGCCTGCTACAGCGAAATCTAGCATGTCGATGGCCCTTGTTGATCAGAACAACCTATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACGCCACACCTAAACAACAGTAAACCAATAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCATTATGCACCCTTCTGTGCAGACTCAAGGGAACATAAACATGCCACTCAATATCAAGACAGAACATGGTGGAACTCAACTAATGCATCATTTGTCCCATCAGCAAACTGGAGGACAGGCTTTAAGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCGTCGTTTCCGATCATATCAGGTAGCATTACGAGTCGAAATGGGACTGCTGATAGTACCCAAGGACCTGGATATAACCTAGTTTCGCCAGCATCCTTGATGATGAACTTTCCAATGAACCAACTCACAGAATTGTCAAACAATTTTTCTCTTCCGAGTGATTCGACAGTATCTACCTTAACCTGTAAAGGGGTGTTTCAAGAAGAGATTAGTTCAGATCTACATGGGTCGGACGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAGGCAGCTTGGCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATGTCTCACCTTCAACTTTGATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCATAATTCATCCTCTGCTGGAAAGACTATCTTTTCCTTTTCGGATGCAACTCAACCCGAGAATGCGCAGAGTAATGCCGAGAAGTTGCCTCTTGATCCCGGGGACGTCAAACCTCAGAGAATCCCCGATGCAAGCTATGAAACCGACCTCTTATCTGAGAACTTTGGCCAGGATGAACTTCTCAGTGTCTTCCTCAAACAAGAACAACAAGGAGACAACGGATCGGTCGACTTTAGCGGTTACCAAACGGAAAATATTTGTGTTTAG 2019 44.53 MDLSHMKGSIPTPTSISDRKSTEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREKNASEGANYSSSVYEGSWNSSKRRRDTEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVKQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSLQCNLNNSFMNPQDPPFGPMASFNGIDLRTLSVTGHLSPQSLAALQATEFRRPATAKSSMSMALVDQNNLFSFENPKLRFVEDQTPHLNNSKPINLFHGIPTKMEPKQLAIMHPSVQTQGNINMPLNIKTEHGGTQLMHHLSHQQTGGQALSNSPASHLPRISSSFPIISGSITSRNGTADSTQGPGYNLVSPASLMMNFPMNQLTELSNNFSLPSDSTVSTLTCKGVFQEEISSDLHGSDGLMSSYDVFSDLHLQKSHDWDSQNVGSLAFGTSHHGNFIQDSFDVSPSTLIHHGFPSSQTNGQNHNSSSAGKTIFSFSDATQPENAQSNAEKLPLDPGDVKPQRIPDASYETDLLSENFGQDELLSVFLKQEQQGDNGSVDFSGYQTENICV 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7770459 7774205 + CmoCh08G012250.1 Cmo08g01225 387958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01225 672 MobiDBLite consensus disorder prediction 570 625 - -
Cmo08g01225 672 CDD REC_typeB_ARR-like 35 149 - -
Cmo08g01225 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 639 - -
Cmo08g01225 672 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Cmo08g01225 672 Gene3D - 210 272 - -
Cmo08g01225 672 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Cmo08g01225 672 SUPERFAMILY CheY-like 32 156 IPR011006 -
Cmo08g01225 672 MobiDBLite consensus disorder prediction 8 22 - -
Cmo08g01225 672 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Cmo08g01225 672 SMART REC_2 33 145 IPR001789 GO:0000160
Cmo08g01225 672 MobiDBLite consensus disorder prediction 570 609 - -
Cmo08g01225 672 Gene3D - 33 166 - -
Cmo08g01225 672 MobiDBLite consensus disorder prediction 175 189 - -
Cmo08g01225 672 MobiDBLite consensus disorder prediction 156 210 - -
Cmo08g01225 672 PIRSF RR_ARR_type-B 14 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmo08g01225 672 MobiDBLite consensus disorder prediction 190 210 - -
Cmo08g01225 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Cmo08g01225 672 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Cmo08g01225 672 MobiDBLite consensus disorder prediction 1 22 - -
Cmo08g01225 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 639 IPR045279 GO:0009736
Cmo08g01225 672 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Cmo08g01225 672 MobiDBLite consensus disorder prediction 156 174 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01225 Cmo14g01636 CCT
Cmo08g01225 Cmo14g01636 ECH
Cmo08g01225 Cmo17g00339 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00070 Cmo-Chr5:259045 Cmo08g01225 Cmo-Chr8:7770459 2.94E-97 dispersed
Cmo08g01225 Cmo-Chr8:7770459 Cmo09g00426 Cmo-Chr9:1898549 2.37E-104 dispersed
Cmo12g00037 Cmo-Chr12:209888 Cmo08g01225 Cmo-Chr8:7770459 2.46E-89 dispersed
Cmo16g00157 Cmo-Chr16:712656 Cmo08g01225 Cmo-Chr8:7770459 2.48E-43 dispersed
Cmo14g01636 Cmo-Chr14:12981700 Cmo08g01225 Cmo-Chr8:7770459 0 wgd
Cmo17g00339 Cmo-Chr17:2056494 Cmo08g01225 Cmo-Chr8:7770459 0 wgd
Cmo06g01548 Cmo-Chr6:10900168 Cmo08g01225 Cmo-Chr8:7770459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10304 PF00072 Response_reg 7.70E-22 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01225 - K14491 csv:101210138 1113.21