Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01226 ATGTCGTTGAGACCGACTGCAAGAACCGAGGTTCGTCGGAACCGTTATAAGGTCTCTGTCGATGCTGAAGAGGGCCGTCGCCGGCGAGAAGATAATATGGTGGAGATCAGGAAGAGTAAACGCGAAGAGAGCCTTCAGAAGAAGCGTAGGGAAGGCCTTCAAGCACAGCAGTTTCCTTCTGCTGTCCACACTTCCACTGTCGAGAAGAAGTTAGAGAGCCTTCCGTCTATGGTTGCGGGGGTCTGGTCTGATAATAGTAATCTTCAGCTGGAGGCAACAACTCAGTTTCGGAAATTACTTTCGATTGAACGAAGCCCTCCCATTGAGGAAGTGATTCAATCTGGAGTTGTTCCGCGTTTTGTAGAATTTCTTGTGAGGGAGGATTTCCCTCAACTTCAGTTATTCTTTTTGTACCGACTTGGATATATGTGTTGCTTGAAGTTTGAAGCTGCTTGGGCTCTCACGAACATAGCGTCTGGAACCTCGGAGCACACAAAGGTGGTTATTGATCATGGTGCAGTTCCCATTTTTGTTAAGTTACTCGCTTCTCCTAGTGATGATGTTCGAGAGCAGTCAAGCTTTTTGTTCCTTTATATGATATGTGTGCTGGCTTTGGGTGAAATTCGAAACTTGAATGCCATGGCTGTGTGGGCTTTGGGCAATGTTGCTGGAGATTCACCTACCTGCCGTGATCTTGTCCTCCGCCATGGAGCTTTGGTTCCCCTTCTCTCGCAGCTGAATGAGCATGCTAAGCTTTCCATGTTGCGAAATGCTACTTGGACACTTTCGAACTTTTGCCGGGGCAAGCCACAACCTCCATTTGACCAGGTAAAGCCAGCTCTTCCTGCACTTGAGCGCCTAGTTCATTCGAATGACGAAGAAGTTCTGACAGATGCCTGCTGGGCTCTCTCTTATCTTTCTGATGGCACAAACGATAAAATCCAAGCCGTGATTGAGGCAGGGGTGTGCGGGCGACTTGTACAGCTCCTATTACATCCTTCACCATCAGTTCTCATCCCTGCTCTTCGGACAGTTGGGAATATCGTGACCGGAGATGACCTTCAAACTCAGGCTGTCATTGATGCTGGGTTAATACCTCCGCTAGTGAATTTGCTTCAAACTGCTGAGTTTGACATAAAAAAAGAGGCTGCATGGGCAATTTCAAATGCAACATCTGGTGGAGCTCATGATCAAATTAAGTACCTTGTCACTGAAGGGTGCATCAAACCATTATGTGATCTTCTTGTATGCCCAGATCCTAGGATTGTTACGGTTTGTTTAGAAGGGTTAGAGAACATTTTGAAGGTCGGAGAAGCCGAAAAGAATTTGGGTGCCAGTGGAGACGTTAATCTATATGCACAGATGATCGACGATGCCGAGGGTTTAGAAAAGATTGAAAATCTCCAGAGTCACGACAACCATGAGATCTATGAAAAGGCTGTCAAAATTCTCGAGACATATTGGTTGGAGGAAGAGGATGAGGCCTTGGCCGCTACTGATGGTGAGGCTCAACCTGGCTTCCGCTTCGGTGGAAACGCGCTTCCAGTTCCATCTGGTGGATTCAACTTTAGTTGA 1575 47.05 MSLRPTARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPSAVHTSTVEKKLESLPSMVAGVWSDNSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQLFFLYRLGYMCCLKFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLASPSDDVREQSSFLFLYMICVLALGEIRNLNAMAVWALGNVAGDSPTCRDLVLRHGALVPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDLQTQAVIDAGLIPPLVNLLQTAEFDIKKEAAWAISNATSGGAHDQIKYLVTEGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGASGDVNLYAQMIDDAEGLEKIENLQSHDNHEIYEKAVKILETYWLEEEDEALAATDGEAQPGFRFGGNALPVPSGGFNFS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7775394 7779139 + CmoCh08G012260.1 Cmo08g01226 387959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01226 524 MobiDBLite consensus disorder prediction 1 52 - -
Cmo08g01226 524 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Cmo08g01226 524 Gene3D - 11 50 IPR036975 GO:0006606
Cmo08g01226 524 PANTHER IMPORTIN ALPHA 212 366 - -
Cmo08g01226 524 PANTHER IMPORTIN ALPHA 355 513 - -
Cmo08g01226 524 PANTHER IMPORTIN ALPHA 2 194 - -
Cmo08g01226 524 SMART arm_5 352 392 IPR000225 GO:0005515
Cmo08g01226 524 SMART arm_5 161 201 IPR000225 GO:0005515
Cmo08g01226 524 SMART arm_5 395 435 IPR000225 GO:0005515
Cmo08g01226 524 SMART arm_5 269 308 IPR000225 GO:0005515
Cmo08g01226 524 SMART arm_5 310 350 IPR000225 GO:0005515
Cmo08g01226 524 SMART arm_5 226 267 IPR000225 GO:0005515
Cmo08g01226 524 SMART arm_5 104 159 IPR000225 GO:0005515
Cmo08g01226 524 Pfam Atypical Arm repeat 450 497 IPR032413 -
Cmo08g01226 524 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 391 IPR000225 GO:0005515
Cmo08g01226 524 MobiDBLite consensus disorder prediction 8 50 - -
Cmo08g01226 524 PANTHER IMPORTIN SUBUNIT ALPHA 212 366 - -
Cmo08g01226 524 PANTHER IMPORTIN SUBUNIT ALPHA 355 513 - -
Cmo08g01226 524 PANTHER IMPORTIN SUBUNIT ALPHA 2 194 - -
Cmo08g01226 524 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Cmo08g01226 524 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 279 321 IPR000225 GO:0005515
Cmo08g01226 524 SUPERFAMILY ARM repeat 13 493 IPR016024 -
Cmo08g01226 524 PIRSF Importin_alpha 195 365 IPR024931 GO:0005737|GO:0006606|GO:0061608
Cmo08g01226 524 PIRSF Importin_alpha 355 523 IPR024931 GO:0005737|GO:0006606|GO:0061608
Cmo08g01226 524 PIRSF Importin_alpha 2 196 IPR024931 GO:0005737|GO:0006606|GO:0061608
Cmo08g01226 524 Gene3D - 72 489 IPR011989 -
Cmo08g01226 524 Pfam Armadillo/beta-catenin-like repeat 162 192 IPR000225 GO:0005515
Cmo08g01226 524 Pfam Armadillo/beta-catenin-like repeat 353 391 IPR000225 GO:0005515
Cmo08g01226 524 Pfam Armadillo/beta-catenin-like repeat 229 267 IPR000225 GO:0005515
Cmo08g01226 524 Pfam Armadillo/beta-catenin-like repeat 397 433 IPR000225 GO:0005515
Cmo08g01226 524 Pfam Armadillo/beta-catenin-like repeat 280 307 IPR000225 GO:0005515
Cmo08g01226 524 Pfam Armadillo/beta-catenin-like repeat 311 349 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01226 K15042 KPNA5_6; importin subunit alpha-6/7 - csv:101209891 826.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01101 Cmo-Chr5:8781306 Cmo08g01226 Cmo-Chr8:7775394 0 dispersed
Cmo08g01226 Cmo-Chr8:7775394 Cmo12g01055 Cmo-Chr12:9752541 0 dispersed
Cmo17g00340 Cmo-Chr17:2062621 Cmo08g01226 Cmo-Chr8:7775394 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01226 Cmo_Chr08 FPKM 5.507812 11.747062 2.205543 2.599455 17.247158 10.931075 12.254776 7.338891 7.995196 7.815415