Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g01236 | ATGTCTCTCCCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTACAAGAATTGGATGTTACAAACATCAGGGAGGAAGCAAGCGGAAGATGGCTTCGCCCAAATGAAATTCATGCAATTCTATGTAACTACAAATATTTTGTCATCCACGTCAAGCCAGTGAACTTGCCTACAAGTGGAACCATTGTACTATTTAACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACCATAAAAGAAGCACACGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACACAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTTGTTCATTACCGTGAAACACAAGAGGTCAATTTTAGCCCAATGCATCTGCAGTTGCAGAGCTCTCCATCCATGTCTATGAATTCAAATTCTGGTTCTGTCTCTGACCCATCAACTCCTTGCCTTTTATCGGAAGAACTTGATTCTAGGGATAATCATGGTTATTCCGTTGACAAAAATGAACGTTCAGAGCCAAGAGACACTACAACAGCCATGAATCATGAACAACGGCTTCATGAGATCAACACGCTCGAGTGGGATGAACTTCTTGTGACAGACGAGCCTTTCAAACCTTCCATACCTAAAGGAGACAGATTTTCATACTTTGACCAACGGAGCCAAGTCCCAACAAATGTGGCCAACAATTTATTGGGGAACACGCCTTTGTTTAATAATCCAGTTGAGCCAATTGGGAGTGCCTATATGCCACTAACAAGTGGTCAAACAAATTTAAATGTGGAGAGTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCTGCAAAGCCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACCGAGTCTCCTGATACAGTCATTGATCCTGCCATTGAGCCATCCATTTCATCCATTCACAATTCTTTTACCGATCCAACATTAAATCACTGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACTGATATCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACCAAGATTCTAATCACGGGATATTTTCACAATGAGTACTTGCATCTGGCAAACTCCAATATATTGGTCGTGTGTGGTAATGCCAGTGTTAATGCTGATTTAATTCAACCTGGAGTTTATCGATGTGTGGTACAACCACATTCAACTGGACTAGTAAATTTATTCGTGAGCTTAGATGGTCATAAACCTATCAGTCAAGTTCTGAATTTCGAGTATCGTGCACCACTTTTACGAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTACATCCAGAAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTTCCCTGAACGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGACAGTTGGATTTATTTGTTGAACTCAATAAAAGAAAATAACACTCCATTTCCTCAAGCAAGAGCCTGTGTTCTTGAGATCATTTTGAAAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTCGATATAAAAGGTCAGGGAGTAATCCATTTGTGTGCCATCTTGGGATATACCTGGGCTATACATCTATTTGCCTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTCGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTAGCTGTTCTTTTGTCAGTTGGGGCAAAACCAAACTTGGTCACTGATCCCTCATCAAAGAACCCTCTGGGATACATAGCTGCAGATCTTGCATCTTTGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTGTCACATTTTAATGATATGAGCTTGGCTGGAAATGTTCGTGGTTCATTGGAAACTAGTACAATGACCGATGCCACTAACTCGGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTGGCAGCTTACCGAACAGCTGCTGATGCAGCAGCGCGCATACAAACTGCATTCCGTGAGAATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCAGAAGATGAAGCACGGGGTATTGTTGCAGCCATGAAGATTCAACATGCTTACCGCAACTTTGAGTCACGAAAAAGAATGGCAGCTGCAGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGAGTTCCTTAATATGCGTCGTCATGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAATGCGGAGGCAGTATCGCAAGATTTTATGGTCGGTAGGCGTAATCGATAAAGCCATACTGCGCTGGCGTCTTAAGAGGAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCAGGAAATTGGCGTAGAAGAGGACTTCTACCACGTGTCCCAAAAACAAGCAGAAGAACGAGTAGAGAAAGCTGTTGTACGGGTTCAGGCTCTGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGAAGGATGAAGTTAACCTACAATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAATTTGAGTAGCTGA | 2760 | 42.03 | MSLPMKADVQGSLVGSEIHGFHTLQELDVTNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPTSGTIVLFNRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNVERIHVYYAHGLDNTTFVRRCYWLLDKTLEHIVLVHYRETQEVNFSPMHLQLQSSPSMSMNSNSGSVSDPSTPCLLSEELDSRDNHGYSVDKNERSEPRDTTTAMNHEQRLHEINTLEWDELLVTDEPFKPSIPKGDRFSYFDQRSQVPTNVANNLLGNTPLFNNPVEPIGSAYMPLTSGQTNLNVESKESIPITSLDNLLNDGLLQSQDSFGRWINEVITESPDTVIDPAIEPSISSIHNSFTDPTLNHCQSSVMEQIFNITDISPAWAFSTEKTKILITGYFHNEYLHLANSNILVVCGNASVNADLIQPGVYRCVVQPHSTGLVNLFVSLDGHKPISQVLNFEYRAPLLREPVVASEQIQKWEEFQVQMRLAHLLFSTSRSLSIMSTKLSPTSLNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQARACVLEIILKSRLREWLIERVAEGSKKSTDFDIKGQGVIHLCAILGYTWAIHLFAWSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSKNPLGYIAADLASLNGYDGLAAYLSEKALVSHFNDMSLAGNVRGSLETSTMTDATNSDSISEEQMYMKETLAAYRTAADAAARIQTAFRENSLKQRTQAIEFSTPEDEARGIVAAMKIQHAYRNFESRKRMAAAARIQYRFRTWKIRKEFLNMRRHAIRIQAAFRGFQMRRQYRKILWSVGVIDKAILRWRLKRKGFRGLQVAPAEVTEQQEIGVEEDFYHVSQKQAEERVEKAVVRVQALFRSKKAQEEYRRMKLTYNEAALEYEELSHPDMNLSS | 919 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7820141 | 7830106 | + | CmoCh08G012360.1 | Cmo08g01236 | 387969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g01236 | 919 | Coils | Coil | 886 | 906 | - | - | |
Cmo08g01236 | 919 | ProSiteProfiles | IQ motif profile. | 795 | 819 | IPR000048 | GO:0005515 | |
Cmo08g01236 | 919 | ProSiteProfiles | IQ motif profile. | 874 | 902 | IPR000048 | GO:0005515 | |
Cmo08g01236 | 919 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 20 | 913 | - | - | |
Cmo08g01236 | 919 | Pfam | IQ calmodulin-binding motif | 796 | 816 | IPR000048 | GO:0005515 | |
Cmo08g01236 | 919 | Pfam | IPT/TIG domain | 371 | 456 | IPR002909 | - | |
Cmo08g01236 | 919 | MobiDBLite | consensus disorder prediction | 188 | 214 | - | - | |
Cmo08g01236 | 919 | Pfam | Ankyrin repeats (3 copies) | 564 | 636 | IPR002110 | GO:0005515 | |
Cmo08g01236 | 919 | SMART | ANK_2a | 607 | 636 | IPR002110 | GO:0005515 | |
Cmo08g01236 | 919 | SMART | CG_1_2 | 32 | 150 | IPR005559 | GO:0003677 | |
Cmo08g01236 | 919 | SMART | iq_5 | 794 | 816 | IPR000048 | GO:0005515 | |
Cmo08g01236 | 919 | SMART | iq_5 | 872 | 894 | IPR000048 | GO:0005515 | |
Cmo08g01236 | 919 | SMART | iq_5 | 771 | 793 | IPR000048 | GO:0005515 | |
Cmo08g01236 | 919 | Pfam | CG-1 domain | 36 | 148 | IPR005559 | GO:0003677 | |
Cmo08g01236 | 919 | SUPERFAMILY | E set domains | 370 | 457 | IPR014756 | - | |
Cmo08g01236 | 919 | MobiDBLite | consensus disorder prediction | 162 | 184 | - | - | |
Cmo08g01236 | 919 | MobiDBLite | consensus disorder prediction | 162 | 214 | - | - | |
Cmo08g01236 | 919 | SUPERFAMILY | Ankyrin repeat | 571 | 670 | IPR036770 | - | |
Cmo08g01236 | 919 | Gene3D | Immunoglobulins | 364 | 460 | IPR013783 | - | |
Cmo08g01236 | 919 | ProSiteProfiles | Ankyrin repeat region circular profile. | 607 | 635 | - | - | |
Cmo08g01236 | 919 | ProSiteProfiles | Ankyrin repeat profile. | 607 | 639 | IPR002110 | GO:0005515 | |
Cmo08g01236 | 919 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 | 20 | 913 | - | - | |
Cmo08g01236 | 919 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 767 | 899 | IPR027417 | - | |
Cmo08g01236 | 919 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 29 | 155 | IPR005559 | GO:0003677 | |
Cmo08g01236 | 919 | Gene3D | - | 513 | 670 | IPR036770 | - | |
Cmo08g01236 | 919 | Gene3D | - | 773 | 819 | - | - | |
Cmo08g01236 | 919 | ProSiteProfiles | IQ motif profile. | 772 | 798 | IPR000048 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g01236 | Cmo14g01600 | CCT | |
Cmo08g01236 | Cmo17g00349 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g01236 | Cmo-Chr8:7820141 | Cmo14g01600 | Cmo-Chr14:12669516 | 2.37E-144 | dispersed | |
Cmo17g00349 | Cmo-Chr17:2121689 | Cmo08g01236 | Cmo-Chr8:7820141 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10308 | PF12796 | Ank_2 | 7.50E-07 | CL0465 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g01236 | K21596 | - | csv:101211298 | 1425.22 |