Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01236 ATGTCTCTCCCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTACAAGAATTGGATGTTACAAACATCAGGGAGGAAGCAAGCGGAAGATGGCTTCGCCCAAATGAAATTCATGCAATTCTATGTAACTACAAATATTTTGTCATCCACGTCAAGCCAGTGAACTTGCCTACAAGTGGAACCATTGTACTATTTAACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACCATAAAAGAAGCACACGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACACAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTTGTTCATTACCGTGAAACACAAGAGGTCAATTTTAGCCCAATGCATCTGCAGTTGCAGAGCTCTCCATCCATGTCTATGAATTCAAATTCTGGTTCTGTCTCTGACCCATCAACTCCTTGCCTTTTATCGGAAGAACTTGATTCTAGGGATAATCATGGTTATTCCGTTGACAAAAATGAACGTTCAGAGCCAAGAGACACTACAACAGCCATGAATCATGAACAACGGCTTCATGAGATCAACACGCTCGAGTGGGATGAACTTCTTGTGACAGACGAGCCTTTCAAACCTTCCATACCTAAAGGAGACAGATTTTCATACTTTGACCAACGGAGCCAAGTCCCAACAAATGTGGCCAACAATTTATTGGGGAACACGCCTTTGTTTAATAATCCAGTTGAGCCAATTGGGAGTGCCTATATGCCACTAACAAGTGGTCAAACAAATTTAAATGTGGAGAGTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCTGCAAAGCCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACCGAGTCTCCTGATACAGTCATTGATCCTGCCATTGAGCCATCCATTTCATCCATTCACAATTCTTTTACCGATCCAACATTAAATCACTGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACTGATATCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACCAAGATTCTAATCACGGGATATTTTCACAATGAGTACTTGCATCTGGCAAACTCCAATATATTGGTCGTGTGTGGTAATGCCAGTGTTAATGCTGATTTAATTCAACCTGGAGTTTATCGATGTGTGGTACAACCACATTCAACTGGACTAGTAAATTTATTCGTGAGCTTAGATGGTCATAAACCTATCAGTCAAGTTCTGAATTTCGAGTATCGTGCACCACTTTTACGAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTACATCCAGAAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTTCCCTGAACGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGACAGTTGGATTTATTTGTTGAACTCAATAAAAGAAAATAACACTCCATTTCCTCAAGCAAGAGCCTGTGTTCTTGAGATCATTTTGAAAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTCGATATAAAAGGTCAGGGAGTAATCCATTTGTGTGCCATCTTGGGATATACCTGGGCTATACATCTATTTGCCTGGTCTGGTTTATCAATAAATTTTCGAGATAAATTCGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTAGCTGTTCTTTTGTCAGTTGGGGCAAAACCAAACTTGGTCACTGATCCCTCATCAAAGAACCCTCTGGGATACATAGCTGCAGATCTTGCATCTTTGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTGTCACATTTTAATGATATGAGCTTGGCTGGAAATGTTCGTGGTTCATTGGAAACTAGTACAATGACCGATGCCACTAACTCGGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTGGCAGCTTACCGAACAGCTGCTGATGCAGCAGCGCGCATACAAACTGCATTCCGTGAGAATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCAGAAGATGAAGCACGGGGTATTGTTGCAGCCATGAAGATTCAACATGCTTACCGCAACTTTGAGTCACGAAAAAGAATGGCAGCTGCAGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGAGTTCCTTAATATGCGTCGTCATGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAATGCGGAGGCAGTATCGCAAGATTTTATGGTCGGTAGGCGTAATCGATAAAGCCATACTGCGCTGGCGTCTTAAGAGGAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCAGGAAATTGGCGTAGAAGAGGACTTCTACCACGTGTCCCAAAAACAAGCAGAAGAACGAGTAGAGAAAGCTGTTGTACGGGTTCAGGCTCTGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGAAGGATGAAGTTAACCTACAATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAATTTGAGTAGCTGA 2760 42.03 MSLPMKADVQGSLVGSEIHGFHTLQELDVTNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPTSGTIVLFNRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNVERIHVYYAHGLDNTTFVRRCYWLLDKTLEHIVLVHYRETQEVNFSPMHLQLQSSPSMSMNSNSGSVSDPSTPCLLSEELDSRDNHGYSVDKNERSEPRDTTTAMNHEQRLHEINTLEWDELLVTDEPFKPSIPKGDRFSYFDQRSQVPTNVANNLLGNTPLFNNPVEPIGSAYMPLTSGQTNLNVESKESIPITSLDNLLNDGLLQSQDSFGRWINEVITESPDTVIDPAIEPSISSIHNSFTDPTLNHCQSSVMEQIFNITDISPAWAFSTEKTKILITGYFHNEYLHLANSNILVVCGNASVNADLIQPGVYRCVVQPHSTGLVNLFVSLDGHKPISQVLNFEYRAPLLREPVVASEQIQKWEEFQVQMRLAHLLFSTSRSLSIMSTKLSPTSLNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQARACVLEIILKSRLREWLIERVAEGSKKSTDFDIKGQGVIHLCAILGYTWAIHLFAWSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSKNPLGYIAADLASLNGYDGLAAYLSEKALVSHFNDMSLAGNVRGSLETSTMTDATNSDSISEEQMYMKETLAAYRTAADAAARIQTAFRENSLKQRTQAIEFSTPEDEARGIVAAMKIQHAYRNFESRKRMAAAARIQYRFRTWKIRKEFLNMRRHAIRIQAAFRGFQMRRQYRKILWSVGVIDKAILRWRLKRKGFRGLQVAPAEVTEQQEIGVEEDFYHVSQKQAEERVEKAVVRVQALFRSKKAQEEYRRMKLTYNEAALEYEELSHPDMNLSS 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7820141 7830106 + CmoCh08G012360.1 Cmo08g01236 387969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01236 919 Coils Coil 886 906 - -
Cmo08g01236 919 ProSiteProfiles IQ motif profile. 795 819 IPR000048 GO:0005515
Cmo08g01236 919 ProSiteProfiles IQ motif profile. 874 902 IPR000048 GO:0005515
Cmo08g01236 919 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 913 - -
Cmo08g01236 919 Pfam IQ calmodulin-binding motif 796 816 IPR000048 GO:0005515
Cmo08g01236 919 Pfam IPT/TIG domain 371 456 IPR002909 -
Cmo08g01236 919 MobiDBLite consensus disorder prediction 188 214 - -
Cmo08g01236 919 Pfam Ankyrin repeats (3 copies) 564 636 IPR002110 GO:0005515
Cmo08g01236 919 SMART ANK_2a 607 636 IPR002110 GO:0005515
Cmo08g01236 919 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cmo08g01236 919 SMART iq_5 794 816 IPR000048 GO:0005515
Cmo08g01236 919 SMART iq_5 872 894 IPR000048 GO:0005515
Cmo08g01236 919 SMART iq_5 771 793 IPR000048 GO:0005515
Cmo08g01236 919 Pfam CG-1 domain 36 148 IPR005559 GO:0003677
Cmo08g01236 919 SUPERFAMILY E set domains 370 457 IPR014756 -
Cmo08g01236 919 MobiDBLite consensus disorder prediction 162 184 - -
Cmo08g01236 919 MobiDBLite consensus disorder prediction 162 214 - -
Cmo08g01236 919 SUPERFAMILY Ankyrin repeat 571 670 IPR036770 -
Cmo08g01236 919 Gene3D Immunoglobulins 364 460 IPR013783 -
Cmo08g01236 919 ProSiteProfiles Ankyrin repeat region circular profile. 607 635 - -
Cmo08g01236 919 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Cmo08g01236 919 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 913 - -
Cmo08g01236 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 767 899 IPR027417 -
Cmo08g01236 919 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cmo08g01236 919 Gene3D - 513 670 IPR036770 -
Cmo08g01236 919 Gene3D - 773 819 - -
Cmo08g01236 919 ProSiteProfiles IQ motif profile. 772 798 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01236 Cmo14g01600 CCT
Cmo08g01236 Cmo17g00349 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01236 Cmo-Chr8:7820141 Cmo14g01600 Cmo-Chr14:12669516 2.37E-144 dispersed
Cmo17g00349 Cmo-Chr17:2121689 Cmo08g01236 Cmo-Chr8:7820141 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10308 PF12796 Ank_2 7.50E-07 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01236 K21596 - csv:101211298 1425.22