Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01253 ATGGCCAACTATCTCGCCTTCCATCTTTGCCTAATAATGTTCGAGCTTATTGCAATCACTTCGGCGAACATGAAAGCATCATACGGAGGAGGGGATGAGAACCAGATGCCCTTCGGCACGCCCCCTTTCTGCCCCGAGGCAGAATCCATCATCTTCTATTGGGTCAAAACTGCCATTGCCGAGGACCCTCGAATGGCAGCGTCTCTGCTTCGACTCCATTTCCATGACTGCTTTGTCAACGGGTGCGATGCTTCAGTGTTGTTGGACGATAACGACAACTTTGTCGGTGAAAAAACTGCAGCTCCAAATGCGAACTCGCTCAGAGGGTTCGAAGTGATTGATGCCATAAAATCCGAGATCGAATCTGTTTGTCCACAGACAGTTTCATGTGCTGACATTCTTGCAATTGCAGCCCGAGACTCTGTCGTTCTTTCTGGAGGACCTGTGTGGAAAGTGGAATTTGGAAGAGGAGACAGCCTGAGCGCCAGCAAAACAGCAGCACAAAACAACATTCCTGCGCCTAACTCCACTGTGGCCACTCTAGTTTCCAAGTTCCAGAACCTTGGCCTTTCTCTCAGAGATATGGTGATTTGGTTCGGTTCTCATCTTTCTTCGACTTTTCTTACCACTTTTTCGACTGAATGTTTCACTATCTATGAAGGGGCGCACACGCTGGGACTAGCACGATGTGTTTCATTCAGTTCTAGGCTGCAGAATAACGGGAACAGCCCTAACGAAGGAGCAAACCAAGAGTTCATCGAGTCACTAAAACAGCTCTGCTCAGAATCTGGTAACACCTCGACACTGGCACATCTCGACCTTGTAACCCCAGTCATGTTCGACAACCAGTATTACATCAATCTTCTCACTGGAGAAGGGTTGCTCCAGTCTGATCAAGTTCTTGTAACTAGTGATCACCAAACTAGAGAAATAGTAGAAACTTATGCTGTGGACCCGATTGCTTTCTTTGAAGACTTCAAGCAGTCAATGGTGAAAATGGGAAGCCTCAAACCACCCGTTGGAACACAGACCGTGATCCGAACTAACTGTCGTACTCCGAGCTAA 1065 47.7 MANYLAFHLCLIMFELIAITSANMKASYGGGDENQMPFGTPPFCPEAESIIFYWVKTAIAEDPRMAASLLRLHFHDCFVNGCDASVLLDDNDNFVGEKTAAPNANSLRGFEVIDAIKSEIESVCPQTVSCADILAIAARDSVVLSGGPVWKVEFGRGDSLSASKTAAQNNIPAPNSTVATLVSKFQNLGLSLRDMVIWFGSHLSSTFLTTFSTECFTIYEGAHTLGLARCVSFSSRLQNNGNSPNEGANQEFIESLKQLCSESGNTSTLAHLDLVTPVMFDNQYYINLLTGEGLLQSDQVLVTSDHQTREIVETYAVDPIAFFEDFKQSMVKMGSLKPPVGTQTVIRTNCRTPS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7912858 7914240 - CmoCh08G012530.1 Cmo08g01253 387986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01253 354 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 328 341 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 287 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Plant peroxidase signature 271 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 CDD secretory_peroxidase 44 351 IPR033905 GO:0004601|GO:0042744
Cmo08g01253 354 Gene3D Peroxidase, domain 2 172 202 - -
Cmo08g01253 354 PANTHER PEROXIDASE 72-RELATED 41 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PANTHER PEROXIDASE 72-RELATED 212 351 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 Gene3D - 44 171 - -
Cmo08g01253 354 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601
Cmo08g01253 354 Gene3D - 337 351 - -
Cmo08g01253 354 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Haem peroxidase superfamily signature 273 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Haem peroxidase superfamily signature 215 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 Gene3D Peroxidase, domain 2 212 336 - -
Cmo08g01253 354 ProSiteProfiles Plant heme peroxidase family profile. 33 354 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 Pfam Peroxidase 55 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 SUPERFAMILY Heme-dependent peroxidases 44 352 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo08g01253 354 PANTHER PEROXIDASE 40 41 203 - -
Cmo08g01253 354 PANTHER PEROXIDASE 40 212 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01253 Cmo-Chr8:7912858 Cmo19g00456 Cmo-Chr19:5523601 7.83E-95 dispersed
Cmo08g01253 Cmo-Chr8:7912858 Cmo03g00743 Cmo-Chr3:6291134 5.70E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01253 K00430 - csv:101205763 558.14