Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01254 ATGAAAGATGAGATTCCTAGTTGCATGTTGGAGTTCCCAATGGACTCGTCTTCCTTTAAGCCCTCCACCTTGTTGAAACCCAAAAACAAGAACAAAAAAAGGGCTACACAACCCAGATTTGCGTTCATGACCAAGACCGAAATGGATCATCTGGACGACGGTTACAGGTGGCGGAAGTACGGTCAGAAAGCCGTTAAAAACAGCCCTTACCCAAGAAGCTATTACCGCTGCACCACCGCCGGCTGCGGCGTCAAAAAGCGAGTCGAACGATCCTCCCACGACCCTTCCGTCGTCGTCACCACTTACGAAGGTCAACACAATCATCAAAGCCCCATCTTGCCACGTGGATCCCTCTCACCATCAATTTCCACCTCCGCCGCCCTCCATCCACCGCCCCTTCTTTTCCAACACCAACAATACACCTACACCTACACTCCGCCACCGCCGCCGCCTATGGAGCTTGTCACGTGCGGAGGATTCGAACCGATGTTCCATTGTTTTGGAGAAGAACGGCGTCGTATTGGTGGATCCTCTCCTAGTTCTGCTTCCTTCAAAGACCATGGGCTTCTGCAAGATATGATCGTACCCTCCTCCTCCTCCTCCTCCTTACACATCCCCAAAGAAGAGTAA 630 51.75 MKDEIPSCMLEFPMDSSSFKPSTLLKPKNKNKKRATQPRFAFMTKTEMDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSHDPSVVVTTYEGQHNHQSPILPRGSLSPSISTSAALHPPPLLFQHQQYTYTYTPPPPPPMELVTCGGFEPMFHCFGEERRRIGGSSPSSASFKDHGLLQDMIVPSSSSSSLHIPKEE 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7916221 7917296 - CmoCh08G012540.1 Cmo08g01254 387987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01254 209 MobiDBLite consensus disorder prediction 13 36 - -
Cmo08g01254 209 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 24 194 - -
Cmo08g01254 209 Pfam WRKY DNA -binding domain 52 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo08g01254 209 MobiDBLite consensus disorder prediction 175 209 - -
Cmo08g01254 209 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 194 IPR044810 GO:0003700
Cmo08g01254 209 SMART WRKY_cls 51 110 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo08g01254 209 Gene3D WRKY domain 36 112 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo08g01254 209 SUPERFAMILY WRKY DNA-binding domain 43 111 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo08g01254 209 ProSiteProfiles WRKY domain profile. 46 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01254 Cmo-Chr8:7916221 Cmo12g00074 Cmo-Chr12:398380 4.57E-45 dispersed
Cmo14g01612 Cmo-Chr14:12805350 Cmo08g01254 Cmo-Chr8:7916221 3.37E-48 wgd
Cmo17g00367 Cmo-Chr17:2255107 Cmo08g01254 Cmo-Chr8:7916221 1.24E-71 wgd
Cmo06g01565 Cmo-Chr6:11028323 Cmo08g01254 Cmo-Chr8:7916221 4.53E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10309 PF03106 WRKY 9.10E-27 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01254 - - cpep:111778475 352.058