Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g01254 | ATGAAAGATGAGATTCCTAGTTGCATGTTGGAGTTCCCAATGGACTCGTCTTCCTTTAAGCCCTCCACCTTGTTGAAACCCAAAAACAAGAACAAAAAAAGGGCTACACAACCCAGATTTGCGTTCATGACCAAGACCGAAATGGATCATCTGGACGACGGTTACAGGTGGCGGAAGTACGGTCAGAAAGCCGTTAAAAACAGCCCTTACCCAAGAAGCTATTACCGCTGCACCACCGCCGGCTGCGGCGTCAAAAAGCGAGTCGAACGATCCTCCCACGACCCTTCCGTCGTCGTCACCACTTACGAAGGTCAACACAATCATCAAAGCCCCATCTTGCCACGTGGATCCCTCTCACCATCAATTTCCACCTCCGCCGCCCTCCATCCACCGCCCCTTCTTTTCCAACACCAACAATACACCTACACCTACACTCCGCCACCGCCGCCGCCTATGGAGCTTGTCACGTGCGGAGGATTCGAACCGATGTTCCATTGTTTTGGAGAAGAACGGCGTCGTATTGGTGGATCCTCTCCTAGTTCTGCTTCCTTCAAAGACCATGGGCTTCTGCAAGATATGATCGTACCCTCCTCCTCCTCCTCCTCCTTACACATCCCCAAAGAAGAGTAA | 630 | 51.75 | MKDEIPSCMLEFPMDSSSFKPSTLLKPKNKNKKRATQPRFAFMTKTEMDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSHDPSVVVTTYEGQHNHQSPILPRGSLSPSISTSAALHPPPLLFQHQQYTYTYTPPPPPPMELVTCGGFEPMFHCFGEERRRIGGSSPSSASFKDHGLLQDMIVPSSSSSSLHIPKEE | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7916221 | 7917296 | - | CmoCh08G012540.1 | Cmo08g01254 | 387987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g01254 | 209 | MobiDBLite | consensus disorder prediction | 13 | 36 | - | - | |
Cmo08g01254 | 209 | PANTHER | WRKY TRANSCRIPTION FACTOR 48-RELATED | 24 | 194 | - | - | |
Cmo08g01254 | 209 | Pfam | WRKY DNA -binding domain | 52 | 109 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g01254 | 209 | MobiDBLite | consensus disorder prediction | 175 | 209 | - | - | |
Cmo08g01254 | 209 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 24 | 194 | IPR044810 | GO:0003700 | |
Cmo08g01254 | 209 | SMART | WRKY_cls | 51 | 110 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g01254 | 209 | Gene3D | WRKY domain | 36 | 112 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g01254 | 209 | SUPERFAMILY | WRKY DNA-binding domain | 43 | 111 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g01254 | 209 | ProSiteProfiles | WRKY domain profile. | 46 | 111 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g01254 | Cmo-Chr8:7916221 | Cmo12g00074 | Cmo-Chr12:398380 | 4.57E-45 | dispersed | |
Cmo14g01612 | Cmo-Chr14:12805350 | Cmo08g01254 | Cmo-Chr8:7916221 | 3.37E-48 | wgd | |
Cmo17g00367 | Cmo-Chr17:2255107 | Cmo08g01254 | Cmo-Chr8:7916221 | 1.24E-71 | wgd | |
Cmo06g01565 | Cmo-Chr6:11028323 | Cmo08g01254 | Cmo-Chr8:7916221 | 4.53E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10309 | PF03106 | WRKY | 9.10E-27 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g01254 | - | - | cpep:111778475 | 352.058 |