Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01262 ATGGTAGCTGAAGCTGAGATCATGTGCACCAAAACCGTTCCTGTCATGAACCTCAACTATCATCTTCGCGTAGCCGAAGACCGCGATGTTCAGATCGATTTGCCGCATCCTTCTTCTTCACCTATCTTTCCCGAGGCAGTTAAATGTTCAGATATCGCTGAAGATGCCCATATAGTGTCAACTGCCATAGATTTTGTTCCAAATATTCGATCTGGTAGCTACGCGGACATTGGAGCTCGGGATTCTATGGATGATGAACATATCTGCATTGATGATCTGTCTACCCACCTCAGATCTATGTTCAAGTGTCCTGTGCCAAGTGGTTTTTATGCTGTTTTCGATGGTCATGGAGGGCCTCATGCAGCTGGCTTTATCAAGAGGAATGCCATTAGATTATTCTTTGAAGATGCTGATTGGTTAAAAATGCTGGATATTAGTTCTATTTCCATGAAAGATTTGGAGAGTTCTCATCGCAAAGCGTTTCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTGGAAGCTCATGTGGGACAACTGCGTTGACGGCATTGATTCTTGGAAGTCATTTGCTTGTTGCAAATGCTGGTGACTGCAGAGCGGTCCTATGTAGGAAAGGTGTAGCTGTTCCAATGTCTCAAGATCACAGGCCTTCTAATTTACTCGAGCGCAAGCGAGTGGAAGCGATGGGAGGGTTCGTAGATGATGGGTATGTGAATGGGTATATTTCAGTAACGAGAACCTTGGGGGATTGGGACCTGAAATTGCCAAATGGCTCCTCATCACCTCTGATTTCTGAGCCACAAGTGGAGCATGCTATTTTAACGAACGATGACGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGACGTAATGTCAAGCCAATACGCCGTCAGTCTTGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCAAGAGTTAGTCTTGGAAGCCTTGCGCCTCAACACATCAGATAACCTTACTGCAATAGTAATCTGCCTTGCTTCTCCCAGCTGCATTCCTCAGCAGCGGATATGGAAGCCGTGTAGTCTGACCGAAGAGGCGAGAAGTAGAAGCAAAAAAGCAGCCAGCAATTTTGTAGGGATACAAAGAAATAGGTTGAGTGTCGCAGAGCTTCAGATCCAACCCCAATTCCAGTTTCTCAATTTCTCCATCTCGCCCAATCAGATGGCACTCGCAAACTGTGCTAGGCGGAAGGCCAACCTTCTATACAGAAACCTCCCTATTTCTTACTCTGATTCCTTCAATCACTCTTTCTCATTCGCATCATTCTCCAGACGCTTTGCCTCCTCTGGATCCGATGAAAACGACGTTGTCGTTATCGGAGGTGGGCCTGGTGGCTATGTCGCGGCAATCAAGGCCGCTCAGCTTGGCCTCAAAACCACCTGTATTGAAAAGCGTGGGGCTCTTGGCGGAACTTGCCTCAACGTTGGCTGTATTCCCTCCAAGGCTCTTCTCCACTCCTCCCACATGTACCATGAAGCTCAGCATTCATTCGCTAGCCATGGAGTGAAGTTTTCTTCTGTTGAGGTTGATTTACCAGCCATGATGGCGCAAAAGGATAAAGCAGTAGGCAATCTCACACGTGGTATTGAAGGTCTTTTTAAGAAGAATAAAGTGAACTATGTTAAAGGCTACGGAAAATTGGTTTCCCCTTCTGAAGTTTCTGTGGACACCATTGAAGGTGGTAACACGGTGGTGAAAGGAAAAAATATAATAATTGCAACTGGATCTGATGTCAAATCTTTACCCGGGGTCACCATTGACGAAAAGAAAATTGTGTCATCAACAGGAGCCTTGGCTTTGTCAGAAATCCCCAAGAAACTTGTTGTAGTTGGAGCTGGATACATTGGGCTAGAGATGGGATCAGTGTGGGGTCGACTTGGATCCGAGATCACAGTTGTTGAGTTTGCCCCTGAGATAGTCCCAACTATGGACGGGGAAGTCCGGAAGCAATTTCAGCGTGCTCTTGAAAAGCAAGGAATGAAATTTATGCTAAAAACTAAGGTGGTTGGAGTTGATACTTCAGGGGATGGCGTGAAGCTGACTCTTGAACCGGCATCTGGTGGTGAACAGACGACACTTGAAGCAGATGTTGTTCTTGTATCTGCTGGTAGAACTCCGTTCACTGCTGGACTTGGGCTAGACAAGTTAGGGATTGAAACTGATAAGGCAGGGCGGATTTTGGTAAATGAAAGATTTGTTACGAATGTGGATGGTGTTTATGCAATTGGAGACGTAATTCCTGGGCCAATGTTAGCTCACAAGGCTGAAGAGGATGGGGTTGCCTGCGTGGAGTTCATAGCTGGGAAGATCGGCCATGTTGACTATGATAAAGTCCCTGGGGTTGTCTATACACATCCAGAGGTTGCATCTGTTGGGAAGACTGAGGAGCAGGTAAAGGCACTAGGTGTGGAATATCGTGTTGGGAAGTTTCCATTCTTGGCAAATAGCAGGGCAAAAGCAATTGATGATGCTGAAGGGGTGGTCAAAATTTTGGCGGAGAAGGAGACAGACAAGATACTCGGCGTCCATATCATGGCGCCCAATGCTGGGGAGCTTATCCACGAGGCAGTACTGGCCTTGCAATACGACGCAGCTAGTGAGGATATTGCCCGCGTTTGCCATGCTCATCCAACGATGAGTGAGGCATTAAAGGAGGCCGCCATGGCAACTTATGACAAGCCCATTCACATCTAG 2739 46.88 MVAEAEIMCTKTVPVMNLNYHLRVAEDRDVQIDLPHPSSSPIFPEAVKCSDIAEDAHIVSTAIDFVPNIRSGSYADIGARDSMDDEHICIDDLSTHLRSMFKCPVPSGFYAVFDGHGGPHAAGFIKRNAIRLFFEDADWLKMLDISSISMKDLESSHRKAFLLADLALADEQSVGSSCGTTALTALILGSHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLERKRVEAMGGFVDDGYVNGYISVTRTLGDWDLKLPNGSSSPLISEPQVEHAILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVLEALRLNTSDNLTAIVICLASPSCIPQQRIWKPCSLTEEARSRSKKAASNFVGIQRNRLSVAELQIQPQFQFLNFSISPNQMALANCARRKANLLYRNLPISYSDSFNHSFSFASFSRRFASSGSDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAQHSFASHGVKFSSVEVDLPAMMAQKDKAVGNLTRGIEGLFKKNKVNYVKGYGKLVSPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVVGAGYIGLEMGSVWGRLGSEITVVEFAPEIVPTMDGEVRKQFQRALEKQGMKFMLKTKVVGVDTSGDGVKLTLEPASGGEQTTLEADVVLVSAGRTPFTAGLGLDKLGIETDKAGRILVNERFVTNVDGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKIGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYRVGKFPFLANSRAKAIDDAEGVVKILAEKETDKILGVHIMAPNAGELIHEAVLALQYDAASEDIARVCHAHPTMSEALKEAAMATYDKPIHI 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7944398 7953347 - CmoCh08G012620.1 Cmo08g01262 387995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01262 912 Gene3D - 792 912 IPR016156 GO:0016491|GO:0050660
Cmo08g01262 912 CDD PP2Cc 69 340 IPR001932 -
Cmo08g01262 912 PRINTS FAD-dependent pyridine nucleotide reductase signature 582 600 - -
Cmo08g01262 912 PRINTS FAD-dependent pyridine nucleotide reductase signature 710 726 - -
Cmo08g01262 912 PRINTS FAD-dependent pyridine nucleotide reductase signature 451 470 - -
Cmo08g01262 912 PRINTS FAD-dependent pyridine nucleotide reductase signature 621 639 - -
Cmo08g01262 912 PRINTS FAD-dependent pyridine nucleotide reductase signature 739 761 - -
Cmo08g01262 912 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Cmo08g01262 912 Gene3D - 450 774 IPR036188 -
Cmo08g01262 912 SUPERFAMILY FAD/NAD(P)-binding domain 447 817 IPR036188 -
Cmo08g01262 912 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 789 911 IPR016156 GO:0016491|GO:0050660
Cmo08g01262 912 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Cmo08g01262 912 Gene3D - 59 343 IPR036457 -
Cmo08g01262 912 PANTHER DISULFIDE OXIDOREDUCTASE 426 912 - -
Cmo08g01262 912 SMART PP2C_4 60 338 IPR001932 -
Cmo08g01262 912 SMART PP2C_SIG_2 85 340 IPR001932 -
Cmo08g01262 912 Pfam Pyridine nucleotide-disulphide oxidoreductase 450 774 IPR023753 GO:0016491
Cmo08g01262 912 Gene3D - 594 717 IPR036188 -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 854 869 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 621 646 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 450 472 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 711 725 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 483 498 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 789 810 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 754 761 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 876 896 - -
Cmo08g01262 912 PRINTS Pyridine nucleotide disulphide reductase class-I signature 585 594 - -
Cmo08g01262 912 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 449 912 IPR006258 GO:0004148|GO:0050660
Cmo08g01262 912 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Cmo08g01262 912 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 484 494 IPR012999 GO:0016668
Cmo08g01262 912 SUPERFAMILY PP2C-like 62 341 IPR036457 -
Cmo08g01262 912 PANTHER LEGHEMOGLOBIN REDUCTASE 426 912 - -
Cmo08g01262 912 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 793 902 IPR004099 GO:0045454
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00483 Cmo-Chr8:2984744 Cmo08g01262 Cmo-Chr8:7944398 4.22E-112 dispersed
Cmo08g01262 Cmo-Chr8:7944398 Cmo17g00985 Cmo-Chr17:8536861 8.96E-128 dispersed
Cmo14g01935 Cmo-Chr14:14326604 Cmo08g01262 Cmo-Chr8:7944398 2.55E-41 dispersed
Cmo16g00861 Cmo-Chr16:4583811 Cmo08g01262 Cmo-Chr8:7944398 2.67E-11 dispersed
Cmo17g00352 Cmo-Chr17:2138239 Cmo08g01262 Cmo-Chr8:7944398 1.76E-70 transposed
Cmo14g01607 Cmo-Chr14:12774354 Cmo08g01262 Cmo-Chr8:7944398 0 wgd
Cmo06g01571 Cmo-Chr6:11076450 Cmo08g01262 Cmo-Chr8:7944398 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10310 PF07992 Pyr_redox_2 5.70E-71 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01262 K00382 - csv:101207718 927.161