Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01267 ATGGAAGAGCAGTCGAGGTTTTGCTTCGAGTGTCTTAAAGGTCGAATCAGAGTCGATTTCTCCGACCGACTCATAGTCTCCTATGCCATCTCCGACACGGCCCTGCCCTTCACCTCCACCGCCGTTGTTCAGGTGTCAAATGGGGAAACCTCAGGCTCTCAATTTATGATCGTGTATCTGCCAGGCCATGATTACTATTGCATAACCAACTATGTGAATGAGTATTTACTGGACAATTTCAACGGTGGTAACGAAGACAGTACTCACACTATATCTCAGATTAGTGGAGATCAAGTTGAAACTCAAGGGGATAGTCCTCATAAAGGTTCGTTGTATTCGCCACAAATTGGAGGGAAATCACTCACTGACGGTTCTAACTACAACCATTCCAGTAGGCTCTCTTGTTCGAGGATAATCAGTTCTTTGGCCCCCATTGCCCGTATTAGCATTTCATCCCCCTCTACCTTTGATGAAATTGCATCCAATCTCTTGTCTGGATCTTTAGAAGATCATATATTGCACTCACTTTGTCTCTTAATTGAAGGAAGAGCTTCAGGAAGGGACTCCATAAATTTTCTTAGCTTAGTTGGAATTCCTTCTTTTCAAGAGACTGTCTTCTTGAATTGCTTGAGGCATCCCAATATCGTGCCTGTTCTTTCAATGCTAAGGACTCATGGTTATACCAATGCAATATTGCCTACGACTCCATACACATTAGAGAACATTCTCCATTATAGTCCGGATGCCATAAAGTCTGAGTGGCATATTAGGTTTCTACTATATCAGCTACTATCCGCCCTTGCCTTTATACATGGCTTAGGGATCTTCCATGGCAATATATGCCCATCCAGTGTGATGTTAAATGAGATGTGCTGGTCTTGGCTGCAAATTTGTGATATGCCTGGGTTAGTGTGTGATTTAAATAGGAAAGAAAAAAAATGTTCGATGGCTACATCAGGACAGATACATTGTTGTGCAAAGGATTGTTCTTCCAAAGCTCTTTACGCTGATTTGAGTGTTTCTTCCTCAATAGACTGGCCGTCTGATTTTATGCGATGGTGGAGGGGTGAGTTGAGTAATTTTGAGTATTTACTTGCCTTAAATAGATTGGCTGGGAGAAGGTGGGATGACCACAAATTTCACACAATAATGCCATGGGTAATAGATTTTAGCACAAAGCCAGATGAGAGTTCAGATGTCGGATGGCGGGACTTAAGCAAAAGCAAATGGCGATTGGCAAAGGGTGATGAACAGTTGGACTTCACCTACACTACCTCTGAAATCCCACATCATGTATCAGATGAGTGTCTCTCTGAGCTGGCTGTCTGCAGCTATAAAGCCAGAAGGTTACCTTTAAGCATTTTACGTATGGCCGTCCGTTCAGTTTATGAGCCCAATGAATATCCTTCTAACATGCAGAGGCTTTATCAGTGGACCCCTGATGAATGCATTCCTGAATTTTATTGTGATTCTCAAATATTTTATTCAATGCATGATGGTATGGCTGATTTGGCTGTTCCTCCATGGGCAGGTAGTCCTGAGGAGTTCATTAAATTGCATCGTGATGCTCTAGAAAGTGATAGAGTCTCAGAAAAACTCCATGAGTGGATTGACGTCACGTTTGGATATAAAATGTCAGGTGAAGCTGCTATTTCTGCCAAGAACGTTATGTTGCCTTTATCTGAACCTACGCTCCCAAGGTCGATGGGACGTCGTCAGCTCTTTAGTCGACCTCACCCAAAACGGAAAGTTCCAACCAAGAGATCATGTCAAAGCCCTGTAATGTCAGTTGAGAATCAATACCATGCAAGTGAAGTGGAAGATAAAGATATTATTATGTCTGAAATATCCTATCTAGAAGAATTAGAAGAAGCATCATCATTCCTTGAAGAGGCCAGACATTTAAATGCTGTTTATGGCTATTATGCTAAAAAATTGGAAGATATGACTTCCAAAGAGGTTTTGTCGGCTGAGAGCTTCAATAAATGTTTAACCAATACTTCTGATATATTTGTACAGCATGAGCTTCGAACCAATATTACACTGAGCTATCTTCTTGAGCATGTTGAAGTGGAGGGTAAAGATTCAATTGGATATCAAGACTTGTTATCATGGAGAGAAAGAATATCTCAATTGCAATTTTCTGATGGTGCTGCGAATGATATCTTTTCTATTGGTTGTATTCTAGCAGAGCTTCATTTGAGGAGGCCACTTTTTCATTCTACCTCATTGACTATGTACTTGGAAAGTGGCATCTTGCCTGGCTTTATGCAAGAACTTCCTCCTGATATTAAAATTCTTGTTGAAGCATGCATCCAAAAGGACTTGACAAGGAGGCCATCAGCCAAAAATATATTGGAATCACCTTGTTTTCCTGCTACAATCAAGTCATGCTACTTGTTTCTAGCTCCACTTCAGATTCTTGCAAAAGATGTTACCCGACTTCGTTATGCTGCAAATTTTGCAAAACAAGGGGCTCTCAAGGCAATGGGAGAATTTGCTGCTGAAATGTGCGCTCCTTATTGTCTGCCTCTTATATTGGCTCCTCAGTCAGATGCGGAAGTAGAATGGGCTTATGTACTACTAAAAGAGTTTTTGAAGTGTCTGATGTCTAAGGCAGTGAAGACTTTGGTTTTACCTGTTATCCAAAAAATTTTACAGGTTCCTGGTTATTCACATTTGAAGGTTTCTCTTCTCCAAGATTCATTTGTAAGAGAAATATGGAATCGGCTTGGTAAACAAGTGTATATGGAAACAATTCATCCTTTGGTCGTGTCTAACCTATCTGTTGCTCCACATAAGAGCTCAGCAGCTGCTGCTTCAGTGCTTCTTATTGGCTCTTGTGAAGAACTTGGGATGCCTGTTACCATTAATCAGACAATCCTGCCTTTAATTAACTGCTTTGGGAAAGGAATCTGTGCAGATGGAATTGATGCGCTGGTTAGAATTGGTGGTCTTTTTGGTGATATATTCGTTGTCAAGCAGATGCTTCCATTACTCAAGAATGTTGTTAGGTGCTGCATTAAATTTTTTTCTCTGTCCAAACCTGAACCCATGCAAAGTTGGAGTAGTTTAGCCCTTATTGATTGTTTCACCACATTAGATGGCCTTGTTGCCTACTTACCAGGTGAAGTGGTATTAAAGGAGCTTATTGAGGGCCAGAAATGTTTGCATGTCATGGTGCTAATTCAGAAGAATTTGGATGTCTCAGTGCTTCAGGTCGCTGCCAGTTCTCTAATGACAGTTTGTCAGCTAATTGGACCAGATATGATTGCATTGCATCTTATACCCCAACTTAGAGAGGTATTCGATGAGCTTGCTTTTTCGCAGGAAGCTGCCTATCGATCTACTTCTCTTGGCAAAAACATGAAATTTTCTGGACCAAGCAGTGATGGAGATGTCCCAAATGAAGGCCGCATGGACCTTGTACTGATTTTGTATCCTACTTTTGCATCTATTCTTGGGATAGAAAAGCTCCGACAGTGTTGTACTACATGGTTGCTTCTTGAGCAATATCTTCTTAGGTACCATCACTGGAAGTGGGAATGTACAGGGGAGTCATCCCGATGCAGTTCAGATAAATTAATGAGCAAGAAGACTGAATTCAGTAAGGGTTCAACTAGTGAATACAGTCCTGCCAAACTTTTACTTAATGGTGTAGGGTGGTCAATCCCTCAATCACAAAGGGCTCAAGGTGCCAAAAACTTGATGCCCCTAAGACGGCTCCATGATGTTCATCAAGGTTCCATGCAAATGCATGCATCAATATGTCACTCTATAAAGCTTGAACCCTGGTTTTGGCTCCCTAGTATAGCATCTAGCTGGGATGGACCTGATTTTCTTGGCCGTGCAGTCGGTCTGAAAGAAGAACTTCCATGGAAAATAAAAGCATCTGTTATTTACTCAGTTCGTGCGCATCATGGGGCAGTAAGATCTTTGGCCATTTGTCCAGATGAATTTAATGTTTTCACCGCTGGAATAGGATCTGGATTCAAAGGAATGGTTCAGAGGTGGGAGTTGTCTGGAGTTAACTGTGTTTCTGGTTATTATGGCCATGAAGAGGTTGTCAATGACATTTGTGTTTTGTCGCCTACTGGAAGAATAGCTTCTTGTGATGGAACTATACATGTCTGGAATAGCCGATCAGGAAAGCTCTTATCAGTATTTGCAGAGTCATCAGTGGATTCTGCACATCTTGCAAGCCCTTTATCTTCTGTTTTAAAGACAAATGCTGACCATGCCAACTCGATAAGTTCCAATTCATTGTCCAGTGGAATATTGACTAGTGCGTTTGATGGAAGCTTGTATACATATATGCACCATATAGAATTTGCTGAAAAGCTTGTAGTGGGCACTGGGAATGGTTCTCTGAGGTTTATTGATGTTTCTCAAGGTCAAAAGCTTCATCTATGGAGAGGAGATGGCATTGAGTCTGGTTTTCCTTCTCTTGTCTCGACTATTTGCTCTTGTGGATTTGACAAAATGGTTGCAGATGGTGCTTCGGCTATGCCTTCCTGGATTGCAGCTGGCCTAAGTTCAGGGTATTGTAGGCTATTTGATGCGAGGAGTGGAAATGTTATAGCCACTTGGCGGGCACATGATGGATATGTAACCAAGTTGGCTGCACCAGAAGATCATATGCTTGTTTCTAGCTCTCTTGACCGGACTTTACGAATTTGGGATCTGAGAAGGCTTTCCCCATCAACGCCAATTATATTGAGGGGTCATAATGATGGTGTATCTAGCTTTTCGATGTGGGGCCAAGACGTCATCTCAATTTCCAGAAACAAGATTGGGCTGTCATCTTTGTCGAAATCTGCGGATGAAGATGGACAATATCGAATTATACCTCAGAACCTCTCGAGCGTGGACCAGGGAACAAGAAATTTATCAGTATTGTCTAGCATTAGTATTCTTCGTTATTCAAGATTATTTGTGGTTGGAACAGAAGATGGTTACATGAAAATTTGTTTTCCTTTTATTGTACTCCCTTTTGCCATGGCCAATCTCCTTGGTGACGCTATGGACGAGATCGCAAGATATGTTTCTGATGTCCCACCAGCTCATTACACGGTCAAGATCGAGTCGTTTTCATTGTTAGCCAAGAACTGTGTGGATAGGTTTGAATCCGGGGAGTTTGAGGCAGGTGGATACAAATGGAAATTGGTAGTCCACCCACTTGGAAACAAAAGTAAAAATGGGAACGACCACATCTCTCTCTATTTGGCGATTGCAGGGACAGACTCCCTACAAACAAATCGGGAAGTGTTCATAGTTTATCGACTTTTTTTGCTTGATCAGAACAACGATAACTACCTCACAGTTGAAGATGGCAAGATGAAGCCTAGGCGGTTTCGAGGAATGAAGAAAGAATGGGGTTTTGATAAATACATTAGCCTCAAAGAATTCAACGAGTCCTCAAATGGGTATCTGGTGGACGATACGTGTGTGTTTGGAGCTGAGGTCTTTGTTTGCAAAGAAAATTTCAAAGGCGGCAAAGGGGAGTGTTTGTCAATGGTAAGGAGTCCCATCATTCACAAGCATATTTGGAAGATTGACAACTTCTCCAAGCTGGATGCCGAGTGCCACGAGTCCAGAATCTTCAACGCGGGGGATCAAAAATGGAAACTTCGAGTGTATCCAAATGGAAGAGGCAGTGGCGAAGGCCATCTTTCATTTTTTCTGGCACTGGCAGACCCCACAACGCTACATCCTGCTACCAAAATATATGCAGAGGTAACGTTGCGCCTGCAAGATCAGGAGCATTCGAAGCATCATTCTGGAAAAGTTTCATACTGGTTTACTGCATCCAACCCAGAAGTTGGAGGGCTTAGATTCATTCTCTTAAGCAAGTTCCGGCAACCAAACATGGGTTTTCTGTTGAAGGACGTTTGCATTGTGGAGGCAGAGGTCAATGTCCTTGGAGTGGCCAATGCGCTCTCTTGA 5946 42.13 MEEQSRFCFECLKGRIRVDFSDRLIVSYAISDTALPFTSTAVVQVSNGETSGSQFMIVYLPGHDYYCITNYVNEYLLDNFNGGNEDSTHTISQISGDQVETQGDSPHKGSLYSPQIGGKSLTDGSNYNHSSRLSCSRIISSLAPIARISISSPSTFDEIASNLLSGSLEDHILHSLCLLIEGRASGRDSINFLSLVGIPSFQETVFLNCLRHPNIVPVLSMLRTHGYTNAILPTTPYTLENILHYSPDAIKSEWHIRFLLYQLLSALAFIHGLGIFHGNICPSSVMLNEMCWSWLQICDMPGLVCDLNRKEKKCSMATSGQIHCCAKDCSSKALYADLSVSSSIDWPSDFMRWWRGELSNFEYLLALNRLAGRRWDDHKFHTIMPWVIDFSTKPDESSDVGWRDLSKSKWRLAKGDEQLDFTYTTSEIPHHVSDECLSELAVCSYKARRLPLSILRMAVRSVYEPNEYPSNMQRLYQWTPDECIPEFYCDSQIFYSMHDGMADLAVPPWAGSPEEFIKLHRDALESDRVSEKLHEWIDVTFGYKMSGEAAISAKNVMLPLSEPTLPRSMGRRQLFSRPHPKRKVPTKRSCQSPVMSVENQYHASEVEDKDIIMSEISYLEELEEASSFLEEARHLNAVYGYYAKKLEDMTSKEVLSAESFNKCLTNTSDIFVQHELRTNITLSYLLEHVEVEGKDSIGYQDLLSWRERISQLQFSDGAANDIFSIGCILAELHLRRPLFHSTSLTMYLESGILPGFMQELPPDIKILVEACIQKDLTRRPSAKNILESPCFPATIKSCYLFLAPLQILAKDVTRLRYAANFAKQGALKAMGEFAAEMCAPYCLPLILAPQSDAEVEWAYVLLKEFLKCLMSKAVKTLVLPVIQKILQVPGYSHLKVSLLQDSFVREIWNRLGKQVYMETIHPLVVSNLSVAPHKSSAAAASVLLIGSCEELGMPVTINQTILPLINCFGKGICADGIDALVRIGGLFGDIFVVKQMLPLLKNVVRCCIKFFSLSKPEPMQSWSSLALIDCFTTLDGLVAYLPGEVVLKELIEGQKCLHVMVLIQKNLDVSVLQVAASSLMTVCQLIGPDMIALHLIPQLREVFDELAFSQEAAYRSTSLGKNMKFSGPSSDGDVPNEGRMDLVLILYPTFASILGIEKLRQCCTTWLLLEQYLLRYHHWKWECTGESSRCSSDKLMSKKTEFSKGSTSEYSPAKLLLNGVGWSIPQSQRAQGAKNLMPLRRLHDVHQGSMQMHASICHSIKLEPWFWLPSIASSWDGPDFLGRAVGLKEELPWKIKASVIYSVRAHHGAVRSLAICPDEFNVFTAGIGSGFKGMVQRWELSGVNCVSGYYGHEEVVNDICVLSPTGRIASCDGTIHVWNSRSGKLLSVFAESSVDSAHLASPLSSVLKTNADHANSISSNSLSSGILTSAFDGSLYTYMHHIEFAEKLVVGTGNGSLRFIDVSQGQKLHLWRGDGIESGFPSLVSTICSCGFDKMVADGASAMPSWIAAGLSSGYCRLFDARSGNVIATWRAHDGYVTKLAAPEDHMLVSSSLDRTLRIWDLRRLSPSTPIILRGHNDGVSSFSMWGQDVISISRNKIGLSSLSKSADEDGQYRIIPQNLSSVDQGTRNLSVLSSISILRYSRLFVVGTEDGYMKICFPFIVLPFAMANLLGDAMDEIARYVSDVPPAHYTVKIESFSLLAKNCVDRFESGEFEAGGYKWKLVVHPLGNKSKNGNDHISLYLAIAGTDSLQTNREVFIVYRLFLLDQNNDNYLTVEDGKMKPRRFRGMKKEWGFDKYISLKEFNESSNGYLVDDTCVFGAEVFVCKENFKGGKGECLSMVRSPIIHKHIWKIDNFSKLDAECHESRIFNAGDQKWKLRVYPNGRGSGEGHLSFFLALADPTTLHPATKIYAEVTLRLQDQEHSKHHSGKVSYWFTASNPEVGGLRFILLSKFRQPNMGFLLKDVCIVEAEVNVLGVANALS 1981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7972020 7985206 + CmoCh08G012670.1 Cmo08g01267 388000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01267 1981 ProSitePatterns Trp-Asp (WD) repeats signature. 1548 1562 IPR019775 -
Cmo08g01267 1981 SUPERFAMILY BEACH domain 340 582 IPR036372 -
Cmo08g01267 1981 Gene3D Transferase(Phosphotransferase) domain 1 201 346 - -
Cmo08g01267 1981 Gene3D - 1441 1658 IPR015943 GO:0005515
Cmo08g01267 1981 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1530 1563 - -
Cmo08g01267 1981 Gene3D Transferase(Phosphotransferase) domain 1 705 798 - -
Cmo08g01267 1981 ProSiteProfiles Trp-Asp (WD) repeats profile. 1530 1563 IPR001680 GO:0005515
Cmo08g01267 1981 CDD MATH 1689 1822 IPR002083 GO:0005515
Cmo08g01267 1981 ProSiteProfiles MATH/TRAF domain profile. 1845 1971 IPR002083 GO:0005515
Cmo08g01267 1981 SUPERFAMILY Protein kinase-like (PK-like) 716 818 IPR011009 -
Cmo08g01267 1981 SUPERFAMILY WD40 repeat-like 1298 1653 IPR036322 GO:0005515
Cmo08g01267 1981 ProSiteProfiles BEACH domain profile. 338 605 IPR000409 -
Cmo08g01267 1981 SUPERFAMILY TRAF domain-like 1847 1975 - -
Cmo08g01267 1981 CDD Beach 352 582 IPR000409 -
Cmo08g01267 1981 CDD MATH 1847 1971 IPR002083 GO:0005515
Cmo08g01267 1981 SUPERFAMILY Protein kinase-like (PK-like) 202 308 IPR011009 -
Cmo08g01267 1981 SMART serkin_6 173 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01267 1981 SMART WD40_4 1617 1658 IPR001680 GO:0005515
Cmo08g01267 1981 SMART WD40_4 1400 1439 IPR001680 GO:0005515
Cmo08g01267 1981 SMART WD40_4 1296 1339 IPR001680 GO:0005515
Cmo08g01267 1981 SMART WD40_4 1342 1379 IPR001680 GO:0005515
Cmo08g01267 1981 SMART WD40_4 1523 1561 IPR001680 GO:0005515
Cmo08g01267 1981 SMART math_3 1692 1803 IPR002083 GO:0005515
Cmo08g01267 1981 SMART math_3 1847 1952 IPR002083 GO:0005515
Cmo08g01267 1981 Pfam MATH domain 1696 1824 IPR002083 GO:0005515
Cmo08g01267 1981 Pfam MATH domain 1852 1973 IPR002083 GO:0005515
Cmo08g01267 1981 PANTHER GH12955P 5 1657 - -
Cmo08g01267 1981 SUPERFAMILY TRAF domain-like 1685 1829 - -
Cmo08g01267 1981 SUPERFAMILY ARM repeat 128 1105 IPR016024 -
Cmo08g01267 1981 SMART Beach_2 350 582 IPR000409 -
Cmo08g01267 1981 ProSiteProfiles MATH/TRAF domain profile. 1687 1822 IPR002083 GO:0005515
Cmo08g01267 1981 Gene3D BEACH domain 348 582 IPR036372 -
Cmo08g01267 1981 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1844 1977 IPR008974 GO:0005515
Cmo08g01267 1981 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1675 1829 IPR008974 GO:0005515
Cmo08g01267 1981 Pfam Protein kinase domain 201 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01267 1981 Pfam Beige/BEACH domain 352 563 IPR000409 -
Cmo08g01267 1981 Pfam WD domain, G-beta repeat 1525 1561 IPR001680 GO:0005515
Cmo08g01267 1981 Pfam WD domain, G-beta repeat 1344 1379 IPR001680 GO:0005515
Cmo08g01267 1981 Gene3D - 1289 1440 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01267 K17601 WDR81; WD repeat-containing protein 81 - csv:101204693 2939.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00380 Cmo-Chr4:1885982 Cmo08g01267 Cmo-Chr8:7972020 7.45E-06 dispersed
Cmo08g01267 Cmo-Chr8:7972020 Cmo17g01185 Cmo-Chr17:9517680 5.88E-24 dispersed
Cmo08g01267 Cmo-Chr8:7972020 Cmo08g00314 Cmo-Chr8:1936043 4.66E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g193 . . . . . . . . Cmo08g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00238 . . . . . . . Cma08g01304 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009197 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74548 PF02138 Beach 1.70E-44 No_clan Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01267 Cmo_Chr08 FPKM 17.670214 22.298485 5.681542 6.512801 9.629725 9.960172 8.488045 7.158636 8.18714 10.788177