Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00005 ATGCAAGGCGCTGTTCTCTTGGCTGCGCAACCACTCCGCGTGAAGTTGCTGTGGAGCAACAATTCCAGTACGGGTAATCCGTCCGCCACCGCAGGCGCCGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAATGAAGGAAATTGGGAAGGACTTGTCAGAATTCAAATGTGGCCTTGCTCACATCTTCTTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATTCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAATATAGTGCCTGAAGGTACATCTGCTCCTTGGAAGCATACACTTGAAGTAAAAGCTAACTCATTCCTGAGCCTTCAAAGTTCTATACTTCTATGCCGTCTAAAAATGATTGAAGGGGCCCGGATGACATGCCCGCGCACATTAAATCATCAATGTTTGGCTGTGCACTCACGGTTCCAATTACAAATGGAAAGTTTAATATGGGTACTTGGCAGGGAATATGGCTATGTGAGCACCGAGACCACCCCACTGCACGCAATATTGTGGTCACCCTGA 615 49.27 MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEGTSAPWKHTLEVKANSFLSLQSSILLCRLKMIEGARMTCPRTLNHQCLAVHSRFQLQMESLIWVLGREYGYVSTETTPLHAILWSP 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11246 17151 + CmoCh09G000050.1 Cmo09g00005 388007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00005 204 PANTHER UNCHARACTERIZED PROTEIN YJBQ-RELATED 28 149 IPR001602 -
Cmo09g00005 204 PANTHER - 28 149 - -
Cmo09g00005 204 Gene3D - 40 152 IPR035917 -
Cmo09g00005 204 Pfam Uncharacterised protein family UPF0047 63 145 IPR001602 -
Cmo09g00005 204 SUPERFAMILY YjbQ-like 46 136 IPR035917 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00005 - - - csv:101209705 249.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g12 . . . . . . . . . . . Cma09g00004 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0002 . . . . Blo17g00913 . . . . . . . Sed13g1219 . Cmo09g00005 . . . Car09g00004 . . Bhi09g02778 Tan01g5192 Cmetu07g1303 . Hepe01g2387 Mch11g0008 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013824 0 1 1 0 0 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00005 Cmo_Chr09 FPKM 41.012722 45.17065 56.549335 57.289268 33.896542 30.744135 31.608583 49.122505 48.070065 47.854946