Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00009 ATGAATAAGGGAATGATGAGCGGCAAACCCAATTTGAGGAAGACTAGAACTTTTTTCCTGCACAAGAACCAAACCTCGATGCAGCAGGCAATCATTCCGAACCAACCAGCTGAATCCGGAGAAGAGCATAATAATCATTATATTGAGAAAGAGAGCCCCCCGGGGGCGGTGAAATTCCCAGTGTCCCCTCAGCTGATGAATGGGGAAGAGATGGTCCATTTCAGTCACCCTCGACACCGCCTGTCCCGGATGTGTAATCTGAACCTGTTTACGTGCGGCGGGTGCAAGGAGTACGGCGCCGGCAACGGATTCAGTTGCCAACAATGTGATTTCCAGCTCCACGACTTCTGCGCCTTCTCCCCTCCGGCCCTCAAGGCCCACCCCTTCCATTCCCACCACCAGCTTCTCTTTTACTCCAAGCCAGTGAAAGGGGGCATCATGCAGTCCAAGTGCGACATTTGCGCGAAGCCCATAAAAGGATTTGCGTTCCGATGCGGGGTGTGCAGCTTCCAGATGCACCCTTGCTGCGCGATGCTGTCTTTGGAAATGAAGATGCCATCGGTGCACCCGCACCCGCTGAGGATGGTGGGAGCAACAACATCATCAGTAGTGGAGCAGCCGAGAAGCTTGGTGGGGTGTGGGGAGTGCAAGAGGAGGAGGTCGGGGAGGGTGTACCGTTGCACGGTGTGTGATTATCAGGTGCATGCAGTGTGCGCAAAGAGCGTGAAAAACGGCCTCCGGGAGAAGGGGTACAAGGAAACAGAGAAGGCCAGCGTGCTTGGGACTGCCGCAAGACTCGCTTCTCAGGTGGTGGTTGAGTTCTTGGGAGGCATCATCGAGGGCCTCGGAGAAGGGGTTGGCGAAGCCTTAGTCCAGAACATCAACGGCAAGGCCGCCCCCACACCTCTTCATCATCGTTAA 921 55.27 MNKGMMSGKPNLRKTRTFFLHKNQTSMQQAIIPNQPAESGEEHNNHYIEKESPPGAVKFPVSPQLMNGEEMVHFSHPRHRLSRMCNLNLFTCGGCKEYGAGNGFSCQQCDFQLHDFCAFSPPALKAHPFHSHHQLLFYSKPVKGGIMQSKCDICAKPIKGFAFRCGVCSFQMHPCCAMLSLEMKMPSVHPHPLRMVGATTSSVVEQPRSLVGCGECKRRRSGRVYRCTVCDYQVHAVCAKSVKNGLREKGYKETEKASVLGTAARLASQVVVEFLGGIIEGLGEGVGEALVQNINGKAAPTPLHHR 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 61426 63098 + CmoCh09G000090.1 Cmo09g00009 388011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00009 306 Pfam C1 domain 128 177 IPR004146 -
Cmo09g00009 306 Pfam C1 domain 188 239 IPR004146 -
Cmo09g00009 306 Pfam C1 domain 74 118 IPR004146 -
Cmo09g00009 306 PANTHER OS09G0492800 PROTEIN 45 295 - -
Cmo09g00009 306 PANTHER DIACYLGLYCEROL KINASE THETA-LIKE-RELATED 45 295 - -
Cmo09g00009 306 SUPERFAMILY Cysteine-rich domain 95 186 IPR046349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00009 - - - cmo:103493863 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00420 Cmo-Chr3:4908454 Cmo09g00009 Cmo-Chr9:61426 1.96E-16 dispersed
Cmo03g00421 Cmo-Chr3:4911208 Cmo09g00009 Cmo-Chr9:61426 1.93E-22 dispersed
Cmo09g00009 Cmo-Chr9:61426 Cmo20g00872 Cmo-Chr20:4416918 6.02E-28 dispersed
Cmo14g01051 Cmo-Chr14:5766690 Cmo09g00009 Cmo-Chr9:61426 1.39E-14 dispersed
Cmo09g00009 Cmo-Chr9:61426 Cmo19g00840 Cmo-Chr19:8207845 9.97E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g23 Blo01g01659 . . . Bpe02g00284 . . . . . . Cma09g00008 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02438 Csa04g02751 . . . . . . . . . . . . Cmo09g00009 . . . Car09g00008 . . . . . . . . . Cla11g01864 Cam11g1933 Cec11g1958 Cco11g1972 Clacu11g2098 Cmu11g1900 Cre11g2309 . . Chy07g00440 Cme07g00010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012721 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00009 Cmo_Chr09 FPKM 29.955555 34.822803 25.574612 28.012119 29.13855 28.051514 33.248718 31.453289 35.32864 34.79353