Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00010 ATGGACGACGTCGGCGCCCAAGTTGCTCCTCCTATTTTCATCCGCCAAACCTTGACCAGTCGCTACACTGATGTGCCTTCCATCCCCAAGAAGCGTGCTTTATCATATCAGCTCCCCAACTTCCATCATCACTTGCAACCTCAGGGTCAACTCCATGCTCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCGCTAGATTCCTCACCAAACCCTCCAAACCTCCGCTTCTCCACTCCGATACTCCCTCATCCGACCTAAAGACCACCCACGATTTCGCTGCTGCTACTCCCTCCACGTTGAACAACACAGTGGAGGCTTTGGAGAACCAGGATGAGAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTTGAGGAGCCCCCGTCCAAACCCCCTAAAAAGGTCCGCCCTGCTTCTCCCGGCGCTGCTACCACCTACCCTATGTGCCAGGTTGATAATTGTAAGGAAGATCTATCGAATGCCAAAGACTATCACCGCAGGCATAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGCGGTTCTGCCAGCAGTGTAGCAGATTTCATCCTCTTTCGGAATTTGATGATGGGAAGAGGAGTTGTAGGAGGAGACTTGCAGGGCACAACTGGCGTAGAAGGAAGACGCAGCCCGAGGATGTATCCTCAAGGCCGACCCGGCCAGGAAGTAGAGGACCCCAAAGCAGTGGGAATTTGGACATCGTCAGTCTATTGACTGCCCTAGCCAAGGCTCAAGGAAAAAACGAAGACCAGACTGTGAAGAGCTTGTTGTCAGCAAATAGTGACCATCTCATTCAGATCCTCAATAAGATCAACTCGCTTCCGTTACCAGCAGACCTTGCAGCAAAGTTGCCCAATTTAGAGAGTTTTAGGGGGAAGGCTCCTCCACAGGGTTCGTTGCAGCACCAAAACATATTAAATGGAAATTCATCTTCTCCTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCAGCATCGGCTCCGGATGCTCTTGCAGTGCTGTCGCAGAAGAGCAGTCTCAGCAGTGATAGTGAAAAAACACGGTCATCGTGCCCTTCTGGTTCTGATCTCCACAATAGGCCTCTGGAACTTCCTTCAGTTGCAGGAGAAAGAAGCAGTACCAGTTATCAGTCTCCCATGGAAGATTCGGATGGACAAGTTCAAGGAACTCGAGTTGGTTTGGCACTCCAGCTGTTTAGCTCTTCGCCTGAACATGATACCCCACCGAATTTGGCGGCTTCTAGGAAGTACTTTTCTTCTGATAGCAGTAATCCTATTGAAGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAGAAGTTGTTTCCCATGCAAAGCAGAGAAGAAGCGAACAGTAATGGGAAATTACCAATCAGAAAAGAAGTTAGTGGTGTTGAGGTTCGAAAGCCTCCTAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTTAGATGGAGCTGGGCCAAATTCATTTCGACCTGTTCCATATCAGGCTGGATACACTTCTTCAGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCCCAGGACCGCACTGGAAGGATAAGTTTTAAACTCTTTGACAAGGATCCCAGTCAATTTCCAGGGGCATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCGTCTGAAATGGAAAGCTACATCCGGCCTGGTTGTGTGGTTCTGTCGGTTTATCTGTCTATGACACCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGATTCATAGCGAAGAGATTGATTTTTGGAGAAGTGGAAGATTTCTAGTTTACACTGGGAGGCTACTGGCGTCACACAAGGATGGGAAGATTCGTCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAATTAATCTCGGTGTCACCTTTAGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTGAGGGGAAGGAATTTGAAAAGTCCTGGCACCAGAAGTGACATTTCACAACCCTGTAGGATTCATTGCACATCTATGGGTGGCTACATATCCGAAGAAGTGATGGGATTCTGTAGGCAAGGAATATACGACGAGATACACTCCAGAAGTTTCAAGGTTGGGGATGCATCACCTACTGACCTTGGTCGTTGTTTCATTGAGGTATATGTTCTGCTTGAAATTGCACATGATACCTGCCCTACGGTGGAAAATGGTTTTCGAGGAAATAGTTTCCCTGTTATCATAGCTGATGCTGCCATCTGTAAGGAATTGCGGCATCTTGAATCGGAGATTGATGGGTTTAGAGTACCTGAAATTAGTTCAGAAAGTCATTCATACGTTACTTCACAGCCAAGGCCAAAGGATGAAATTTTGCTATTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGATCGTCTTCTGGCTTAGATAATCCAGATATTTTAATAAGGCGGTTCAAATTTGTACTCACGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTTAAAACACTTCTTGACATTTTGGTAAAAAAGTGCTTGATCACACATGGACTATCAACGAAATCTTTGGAGATGATATCTGAGATTCAGCTCTTGAATCGATCAGTTAAAAGGAGGTGCAGGCGGATGGTTGACCTACTCGTTCATTATCACGTATCTGGCTTTGGTGATGCTGAGAAAAAGTACCTCTTTCCACCAAATTCTATTGGTCCTGGTGGCATTACGCCTCTGCATTTGGCAGCTTCAATGACAGATGCAGATGATATCGTTGATGCACTGACAAATGACCCGCTAGAGTCTCAGAAGGTTATTAGAGTCGGTAGCCCAGGAAAAGTGAATTGTTACGTTGTTTTGAACGTTATTGGGTTGGAGTGCTGGAGTTCCCAACTTGATGCAAACGGACAGTCGCCAGGGGCTTATGCTTTAATGAGGGGCAATCATTCTTGTAATGAGCTGGTGGAGCGAAAACTTGGTGACAGAAAGAATGGTCAAGTTTCGTTAAGAATTGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGAGAGAGGGGCAGGGCGCAAGTCCGATCCTGCTCCAGGTGTGCTATTGTTGCAGCAAAGTGCAACAGGAGGGTTCCTGGGAGTGGGACACACAGGTTACTTCATCGGCCCTACATTCATTCAATGCTTGCTATTGCTGCAGTGTGCGTTTGCGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGACTATGGGACAATATAG 3339 46.36 MDDVGAQVAPPIFIRQTLTSRYTDVPSIPKKRALSYQLPNFHHHLQPQGQLHAHTWNPKAWDWDSARFLTKPSKPPLLHSDTPSSDLKTTHDFAAATPSTLNNTVEALENQDESLRLNLGGGLNLNYVEEPPSKPPKKVRPASPGAATTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVSSRPTRPGSRGPQSSGNLDIVSLLTALAKAQGKNEDQTVKSLLSANSDHLIQILNKINSLPLPADLAAKLPNLESFRGKAPPQGSLQHQNILNGNSSSPSTMDLLTVLSATLAASAPDALAVLSQKSSLSSDSEKTRSSCPSGSDLHNRPLELPSVAGERSSTSYQSPMEDSDGQVQGTRVGLALQLFSSSPEHDTPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPMQSREEANSNGKLPIRKEVSGVEVRKPPSSNIPFELFRELDGAGPNSFRPVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGALRTQIYNWLSNCPSEMESYIRPGCVVLSVYLSMTPIAWEQLEENLVLHLKSLIHSEEIDFWRSGRFLVYTGRLLASHKDGKIRLNKSSKAWSNPELISVSPLAVVGGQKTSFLLRGRNLKSPGTRSDISQPCRIHCTSMGGYISEEVMGFCRQGIYDEIHSRSFKVGDASPTDLGRCFIEVYVLLEIAHDTCPTVENGFRGNSFPVIIADAAICKELRHLESEIDGFRVPEISSESHSYVTSQPRPKDEILLFLNELGWLFQRERSSSGLDNPDILIRRFKFVLTFSAERDFCALVKTLLDILVKKCLITHGLSTKSLEMISEIQLLNRSVKRRCRRMVDLLVHYHVSGFGDAEKKYLFPPNSIGPGGITPLHLAASMTDADDIVDALTNDPLESQKVIRVGSPGKVNCYVVLNVIGLECWSSQLDANGQSPGAYALMRGNHSCNELVERKLGDRKNGQVSLRIGNEIEQLEVSSGERGRAQVRSCSRCAIVAAKCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDYGTI 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 64679 70512 - CmoCh09G000100.1 Cmo09g00010 388012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 307 329 - -
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 233 249 - -
Cmo09g00010 1112 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 1112 IPR044817 GO:0003677
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 512 537 - -
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 218 249 - -
Cmo09g00010 1112 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 421 460 - -
Cmo09g00010 1112 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 516 537 - -
Cmo09g00010 1112 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 37 1112 - -
Cmo09g00010 1112 Gene3D - 145 214 IPR036893 GO:0003677|GO:0005634
Cmo09g00010 1112 Pfam SBP domain 153 226 IPR004333 GO:0003677
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 356 377 - -
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 356 409 - -
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 314 329 - -
Cmo09g00010 1112 MobiDBLite consensus disorder prediction 389 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00010 - - - cmax:111474399 2024.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02108 Cmo09g00010 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00010 Cmo-Chr9:64679 Cmo14g00981 Cmo-Chr14:5243293 7.50E-37 dispersed
Cmo09g00847 Cmo-Chr9:4343892 Cmo09g00010 Cmo-Chr9:64679 9.47E-32 dispersed
Cmo01g02108 Cmo-Chr1:14584798 Cmo09g00010 Cmo-Chr9:64679 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10311 PF03110 SBP 3.80E-29 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00010 Cmo_Chr09 FPKM 43.861496 49.127388 40.769562 42.499916 44.224377 39.947525 44.290848 42.964596 39.149441 36.448895