Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00011 ATGGCTGACATGGATGTGCTCGCCGACTTCTCTGAGGTTAACGAGAAATGTACCTTGGATATGAGTACCTACGAGAATTTGCCTAAAGCCTGCAATGCAGAACCCCTTGACTGTGCTACTGCAATTCCTAAGGATGATACGGACGGTTCTTACGTTTTCGTTAGCTCCAACGATGCTGCAACTTCCGATGATCACGTTGCTTCCGATGTCAATGGGCAAGCAAAGTGTTCCCAGAATGTTGATACGGAGATTAAGGTTCGTGATGGGGAATTGAGTACTGACGACGGTAGAAAACCTGAACCGATTTTCGTTTCTGATGCACTGGGGGATTCCCAATTCAATTTTTCTGAGCATGTGAATGAGAGTGACGCAATTCTGGATGAGATCAGAGTGGCGGATGTCCTTCAATCTTCTGACGCCAAGGAGGATGAAGCGGAACCTCAACTGAATTTTTCTCCAACGGTGGAAGAAACTCGAATCCCGGAGGGCCAGGCTACCAACGAATCTTTTGATGCAGTGACAAATTCCGGCGAAATCCATGGGGTAGAGTCTCCTCATGAAACTGAAGACATTCACATTCAGGAGGAAAATCAAATAATTTCTACCCCTGGATCTTCTAACCCCGATTCAAATCGTAGTGGAGAAGTCAAGGTGGAGTCTTCTCAAATGGCGGAAGATATTCAAATTCATGAGGATAATGGAATAGTGGGAATCATGAAGTCTTCTGATACCGAAGAAAATCATGTGATAGGCATTGAGGCGGAGTCTTCTCAGAAAGCGGACAGTATCCAGATTCACAAGGAAAATGGAACGGTTGCAATCATGCTTTCTGATACTGAGTCAAACCCTGGGGAAGAAACCGAGGTAGAGTCATCTCTAAAGGCAGACGACACTCAGAATCACGAGGAAAATGGCATAGTGAAAGCCTTTGATTTGTCTAATACCGAGGCAAATCCTAGGTCAGAACTCGAGGAGGAATCTTCTCGGGAGGTGGAGGACATTGAGCTTAGGGGGCAAAATGAAATAGTCGAAACCAACAAATCGTCTGCTTCCATGGAAAAGCGTGGGGAAGAAGGTGAAGTAATTCCCGAGGATAATGAAACAGTGGTTATCAATGAATTGTCTGATACCATACCTAACCGCAGTGAAGAAACTGAGATGGAATCTTTTGAGAGAGAGGAAAGCATTCGAGAATCACAAGATGCAACGATGGAGGCTGCTGACTGCAATTGTGTTAATGTCCAAGAGAAGGTTGATGAGATGGTAAGTAAAGCTGTGGTAAGCGATTCTGTAGGAGGAATAGGAGAATCTCAAATTATAAGTTTGGGTGCTGCTAAATCCGAGGTAGATCATCTTGATGATTCCGTGGAAGACGTTAAAGGGGAATGTAAACAAGGGGTTGCATTGAATGAAGAGAACCCTGAGAGCACTCAAATTACAATTAGTCAGGATGGCGAACGTTTCCAGGTTGCTGGTGAGGAACAAGAAAGTTTAAATAATGAACTTTCTCTTTTAGAGCCCTCAGAAGAAAACAAAGCGGACATGGAGCAGGATTTGGAAGCAACTCCTAGTCCATTGGTCTGTCCAGAAGACATAAATGGTTCTATGCCCATTAGGACGGATGATGGCTTGCCAACTAGTATGGATCAAGATGACCCCTTGGAGGCTATTGATGACAAAGACACTATAGTTAACAGGACCAGCTTCCATGACCTTACTGAATCCTCACCTGGCTCTGTAGATTATGATATTGCTACTGATGAAACTCATATATTATCTCCTACGATGTTTATTAGTGATCCAAGAGTAGAGTTAAATGAGATTACCGTGAATGAACAAGTGGTGAATCATGTATTCGAACTGGAAGAGAATTCAGAGACGGTTTCTCAACCTAAGGTGGACGAATGTATCAAGGTTGGAGATTTGGAATGTACAGTCTCTGGAAATGGAGATGATATGCCCACTGCACTCGACCAATCTAGAATTGCTTGTGGTGACAACTCTGTTGCTGGCAGTCAATTAATCCCTGAGGACATTGAGCGAGTGGAAAGCATTGAAACAGCAGTATCTATTGTTGTGATAGGAAATACTAAGATTGAAATAAGGGAAACGCCCTCTGTGAACTGTCTTAATGATCCATTCCTGAGATCCGATCTTCGCGTTGAGCATTGTACAATGTCTGAAAATGTGGCCTCTGCTGGTGATGATGTCCTACCGGATCAGGAAGTCAGTGAAAATCATGAGGATGACCTTCTTGGTAACTCTAATTTTGAGATCAAGTGTGAGAACGGTCACATCGAAAAAGATGACCAATCAACTTTCCACAGTAATGATATGAGATCAAAATCTAAGGATTGTACTTCAATTGAAAATGAAGAGAGAGGTTCCACTGTTCCTGAAGTTCCTAATGGTGTCGTTAAATCTCCTGAAATTCCACAAAGTTCTGCTGTTGAAACAGGCTCGGAATTGCATGATAACAAAAGTAGCTCAAGTCCAACTGCTAATGAGAATTCAGTGGATGACATCGAGATTACATCTTCCATAGGAGGTGGTAGCAGAACTATACCTGGCGATGATTGCAGTGTGTCAAAAACTGAAGTTCTCAAGCGTTCCATGATAAAAGATGAAGGGAGTCTGAACTCAATCTCTGATGTTGTCTTTGAAACTGATGGTAAACTGACGAAAGATGAAACTGAGGTCATTCATGAGGATTGCCAGAATGAACCTTCACCCGTTTCTCCAGAAGGTTCTGCTGATGCTTTGACGGGGCAAAATGTAGGGGCTGAGGCAGGAACAAGGCCGTTTAACTTTTTGGTTAAGGTACCTAGATTTGATGATCAAAATATAAGAGAGCAGATTAAGTGTGCTCAGACAGAAGTTGATCGGAAGACCAAGGATCGAGATGCCATTCGGGTTCAAATACAGACAATGAGGGCTGCATGTAAAGTGTTGAGTGATAATCTTGAAGCAGCAATGTCGGAAGGAAGAGCTGCAAGAGACTTGCTGAAGTCAAAAAGACTGGAGATAGACTCTGTTCAGTCAGTGATAACAAAAGTGAAGAATGCAATGTCCGTTGAGGATATCGATGGCAGGATACGCAACACTGAACACATGATAGAGCATGAAACGCTGCCACTAAAAGAGGAAAAGCAATTACTTCGTGAAATCAAGCAATTGAAGCAGCAGCGGGAACAGCTTTCATCAACTATGGGTAAGCAGGAAGAGCTTCAACAGGCACTGGACCAGAGAGACCAGATTGAAGAGCGCCTAAAGCTATTAAGAAAGGAGATGGATTTACTGAGGGGCAATGTTTTGAAAGCCGAATCAGTAATAAAGGTCGCTAAGAAGAAATATAATGATGAAAGCATAAAGCTGGACGAGTTGCAATCCCAGTTTAAAGCAGCAGATGAGATTCGCCAAGAAGCATATGCTGATTTACAGAGTACGAGGAAGCAATTGTCTGAGAAGAACAAATACTGCTGGAATTATCGGAAGGACGCAAAGGAAGCCAATGAAATAGCATTGAGTGGAGATCTAGAGAGACTGCAACGTTTGTGTGTTAATCAGGTAGAGCGCATGATGGAACTGTGGAACACAAATGCCGAGTTCAGGGAAGAATATATTAAGAGCAACATGAGGAGTACCCTGTGGCGACTAAAGACGTTGGATGGCCGCTCCCTTGGCCCCAATGAAGAGCCGCATGTACCGAACCGTATTGTAAAGGAGAGACCAGCGAAGGACAATTCTCTTTTAACGGTTTCAACAATGCAGGAAACAGAAAAATTGATACCCGCTGCTGATGCTGATGATGCGAGAGACAATGACAAATCAGTGACGAAAGTAGCCGAAACGAAGAATCGAACTACAAAAAAGAAGCCCGAAACAGTTGTGGCCTTAGAGAGTGGCCCCAGAAATATCTCTAGCGAGAATGAGGTAGAAGAGCCACCGCGACCAGTGGAGATTAAGCGAACAAGAGAGGAAGAGGAGATGGCGGCGAAAGCAGAAGAGTTGAGAAAGGAAGAGGAAGCAATCAAGTTGAAGGAACGACGTAAGTTGGAAGAGAAGGCCAAAGCCAAAGAGGCGTTGGAGAGGAAAAGAAGAAATGCTGAGAAAGCTCAGGCCAGGGCGGCAATTAAAGCACGGAAAGAGGCGGAAGAGAGAGAGAAGCTAAGGGAGAAGAGAGCAAAAAAGAAGGAAAGGAAGATAGCAGCTGGGACGGAAGCTGGGAATGGTCGGGATGAAATGGAATGTGCCATAGTCACCAAGACCCCAGCAGCAGAAGGTCCGAAGGAGGAGTCCGAAAACAGAGGTAATCAGGGGACAGCAGCGAAGAGGCGGCCTAAAAAAGCATCGCAGTACACAAAGCAGAGCAAAACAAAGTCAATGCCTCCGCCACTTCGAAACCGGGGTAAGAGGAGGATGCAACCATGGATGTGGATTCTTCTGACAACCCTGGTTGTATTGGCGCTGTTCTTTGTCGGACAACAACAGCTTCTCTACTAG 4503 44.28 MADMDVLADFSEVNEKCTLDMSTYENLPKACNAEPLDCATAIPKDDTDGSYVFVSSNDAATSDDHVASDVNGQAKCSQNVDTEIKVRDGELSTDDGRKPEPIFVSDALGDSQFNFSEHVNESDAILDEIRVADVLQSSDAKEDEAEPQLNFSPTVEETRIPEGQATNESFDAVTNSGEIHGVESPHETEDIHIQEENQIISTPGSSNPDSNRSGEVKVESSQMAEDIQIHEDNGIVGIMKSSDTEENHVIGIEAESSQKADSIQIHKENGTVAIMLSDTESNPGEETEVESSLKADDTQNHEENGIVKAFDLSNTEANPRSELEEESSREVEDIELRGQNEIVETNKSSASMEKRGEEGEVIPEDNETVVINELSDTIPNRSEETEMESFEREESIRESQDATMEAADCNCVNVQEKVDEMVSKAVVSDSVGGIGESQIISLGAAKSEVDHLDDSVEDVKGECKQGVALNEENPESTQITISQDGERFQVAGEEQESLNNELSLLEPSEENKADMEQDLEATPSPLVCPEDINGSMPIRTDDGLPTSMDQDDPLEAIDDKDTIVNRTSFHDLTESSPGSVDYDIATDETHILSPTMFISDPRVELNEITVNEQVVNHVFELEENSETVSQPKVDECIKVGDLECTVSGNGDDMPTALDQSRIACGDNSVAGSQLIPEDIERVESIETAVSIVVIGNTKIEIRETPSVNCLNDPFLRSDLRVEHCTMSENVASAGDDVLPDQEVSENHEDDLLGNSNFEIKCENGHIEKDDQSTFHSNDMRSKSKDCTSIENEERGSTVPEVPNGVVKSPEIPQSSAVETGSELHDNKSSSSPTANENSVDDIEITSSIGGGSRTIPGDDCSVSKTEVLKRSMIKDEGSLNSISDVVFETDGKLTKDETEVIHEDCQNEPSPVSPEGSADALTGQNVGAEAGTRPFNFLVKVPRFDDQNIREQIKCAQTEVDRKTKDRDAIRVQIQTMRAACKVLSDNLEAAMSEGRAARDLLKSKRLEIDSVQSVITKVKNAMSVEDIDGRIRNTEHMIEHETLPLKEEKQLLREIKQLKQQREQLSSTMGKQEELQQALDQRDQIEERLKLLRKEMDLLRGNVLKAESVIKVAKKKYNDESIKLDELQSQFKAADEIRQEAYADLQSTRKQLSEKNKYCWNYRKDAKEANEIALSGDLERLQRLCVNQVERMMELWNTNAEFREEYIKSNMRSTLWRLKTLDGRSLGPNEEPHVPNRIVKERPAKDNSLLTVSTMQETEKLIPAADADDARDNDKSVTKVAETKNRTTKKKPETVVALESGPRNISSENEVEEPPRPVEIKRTREEEEMAAKAEELRKEEEAIKLKERRKLEEKAKAKEALERKRRNAEKAQARAAIKARKEAEEREKLREKRAKKKERKIAAGTEAGNGRDEMECAIVTKTPAAEGPKEESENRGNQGTAAKRRPKKASQYTKQSKTKSMPPPLRNRGKRRMQPWMWILLTTLVVLALFFVGQQQLLY 1500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72544 78415 - CmoCh09G000110.1 Cmo09g00011 388013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00011 1500 Coils Coil 974 994 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 318 332 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 768 860 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 279 298 - -
Cmo09g00011 1500 Coils Coil 1323 1401 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 1348 1470 - -
Cmo09g00011 1500 Coils Coil 1046 1103 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 199 218 - -
Cmo09g00011 1500 Coils Coil 1111 1145 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 808 852 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 311 332 - -
Cmo09g00011 1500 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 355 1493 - -
Cmo09g00011 1500 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 355 1493 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 768 791 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 1427 1441 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 1323 1342 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 1348 1407 - -
Cmo09g00011 1500 MobiDBLite consensus disorder prediction 1267 1293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00011 - - - csv:101219495 1845.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02107 Cmo09g00011 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01263 Cmo-Chr1:10115879 Cmo09g00011 Cmo-Chr9:72544 5.41E-36 dispersed
Cmo09g00011 Cmo-Chr9:72544 Cmo09g00852 Cmo-Chr9:4388728 1.04E-34 dispersed
Cmo01g02107 Cmo-Chr1:14578096 Cmo09g00011 Cmo-Chr9:72544 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00011 Cmo_Chr09 FPKM 13.992559 14.930731 4.616998 5.05946 10.39704 9.91293 10.251943 2.061211 2.013688 2.187773