Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00019 ATGAGAATGGCGGGGTACAGCGAAGAAGGAGGAGCGGGTTCACGCTACGTGCAACACCACCACCACCATCATCAACTTCTGAATCCTGAACTGCATCTGGACACGCCCTCCTCCTCCTCTATTCCATTTCCTCATCCTCATCTATTCAACCATTCCAATCACTCCGACGATGGTGATGATAATAATGATACTAATAATAATACTAATCCCTCTCAAAACCAACACGCCTCCCTTCGCCGCCCTCGTGGCCGTCCTCCTGGATCCAAAAACAAGCCCAAGCCTCCCATTATCCTCACTCGCGATAGTCCCAACGTCCTCGGCTCTCATGTCCTCGAGGTCTCCGCCTCCGCTGATATCGTCGATAGTCTCTCCAATTACGCCCGCCGCAGAGGGAGAGGACTCAGCATCCTCTGCGGCACTGGTACTGTCGCCAACGTCACGCTCCGTCACCCATCTGCCTCTCCTACGGCTAGCGTCATCACTCTTCATGGCAGGTTCGAGATTCTCTCCCTCACAGGCACTGTGCTTCCCCCGCCAGCTCCCCCGCAGGCAGGTGGACTGTCTATATTCCTAGCCGGGGCACAAGGGCAGGTGGTTGGAGGGACGGTGGTGGGGCCCTTGGTGGCTTCGGGGCCGGTGATTTTGATGGCGGCGTCATTCTCCAACGCTGTGTTTGAAAGGTTGCCTCTGGAAGAGGAGGAGGAAGGGGGAGTGCAAGTTCAACCGACGGCGTCGCAGTCGTCGGGAGTGACCGGAGGCGGACAGATGGGGGAGGGCGGTGGGAATCCAAACGAGGGGAGCGGCGGCGGAGTTGGGTTCCTGGGCAACAGTACAATAGCGGGATATCCTCCATTTGCAGGGGATTTGTTTGGTTGGGGAAGTGGAAGTGGAAGTGGGAGTGCCACAAAGCCTCGTCAGTTCTAA 924 57.03 MRMAGYSEEGGAGSRYVQHHHHHHQLLNPELHLDTPSSSSIPFPHPHLFNHSNHSDDGDDNNDTNNNTNPSQNQHASLRRPRGRPPGSKNKPKPPIILTRDSPNVLGSHVLEVSASADIVDSLSNYARRRGRGLSILCGTGTVANVTLRHPSASPTASVITLHGRFEILSLTGTVLPPPAPPQAGGLSIFLAGAQGQVVGGTVVGPLVASGPVILMAASFSNAVFERLPLEEEEEGGVQVQPTASQSSGVTGGGQMGEGGGNPNEGSGGGVGFLGNSTIAGYPPFAGDLFGWGSGSGSGSATKPRQF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 120401 121324 + CmoCh09G000190.1 Cmo09g00019 388021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00019 307 MobiDBLite consensus disorder prediction 62 78 - -
Cmo09g00019 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 234 - -
Cmo09g00019 307 MobiDBLite consensus disorder prediction 232 273 - -
Cmo09g00019 307 MobiDBLite consensus disorder prediction 31 46 - -
Cmo09g00019 307 MobiDBLite consensus disorder prediction 1 102 - -
Cmo09g00019 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 296 IPR014476 GO:0003680
Cmo09g00019 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 19 296 - -
Cmo09g00019 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Cmo09g00019 307 MobiDBLite consensus disorder prediction 239 253 - -
Cmo09g00019 307 CDD DUF296 109 194 IPR005175 -
Cmo09g00019 307 Gene3D - 108 247 - -
Cmo09g00019 307 ProSiteProfiles PPC domain profile profile. 103 243 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00019 Cmo-Chr9:120401 Cmo04g01239 Cmo-Chr4:6293402 4.39E-64 dispersed
Cmo09g00019 Cmo-Chr9:120401 Cmo06g01155 Cmo-Chr6:8855557 3.11E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00019 - - cpep:111779195 424.091