Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00034 ATGCGTCCCTTCAGGTACCTCGCCGGTGTGAACTCCTCCGCCATCTCCGACTCGGCTGAGCCCCAGACATATGACTCTGACTTCGTCATAATCCTAGCTGCCCTCCTCTGTGCCTTGATATGCGTTCTCGGTCTCGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCACCTAGCCGGCAATGTCAGCGGCGGCGCTTCCACTCGTCCTCCTCCTCCTCCTGCGTCCAATAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACAACTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCAGTCGGTGATGAAATCCGGGTGCTGCCGCAGTGCGGCCATGGATTTCACGTGTCCTGCATCGATATGTGGTTCCGATCTCACTCTTCATGTCCTTCGTGCCGTCAGATTCTTGTGGTAAGTCAGTGCCAGAAGTGCGGTGGTTTTCCGGCAAGCTCGAGTTCGAACGGTGGGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGATATGTTTTCCTGCTCATGTAATGGCATCCAGTTGGACTCTGCGGTTTCATTCTTATTCTTTCCAGCCATACGTATGGGTTCGAAAGCCTCTTGTTCTGTCCGGCTTATCCGAACTTGGAATTGGTTATAAATGCGCTGGCATTAGATATGGTCATTTGAACATTAACCGGAATCGGCATCGAATTGGTCGCAGATTTCTAATAAATTCGGCTGAGGGGTCCGGGAGCACTGATTCCGGACGAAATGTCGAAGATGATGAAATTATGGTCAAGAGTGGGACTGGTGGTGTAGCTTCCAGAGATTACAAGGGGAAATTGCAGGAGATGATTTATTCGTCGCCTCCAGGCGTTTTCCTTATGAACAGATGTACTGGAAATGGTCTTGCAATTGGGTTTTGCATTGCGACGGCTTGTTTAGCAATAGTTGCAAGAGTGTATTTGATGGGAAAATCCAGGAGCAGTCATTCCGGATCAGTGGCTGATCTAGTCAGGCGTGGTCAGCTAAGATCTGACAGAAGAGGCATTTCCAAACCTTTAAAGTACAATGATCCCTTTAACAATCCATTGGTGAAGGTTGACAAAAGCAATTCTTCCGTAGAAATGTGTGGAAAGGTTTATCGGTTGGCCCCGGTTACTCTTACGAAGGAGGAACAAAGTATTCATCAGAAACGGAGGTCTCGGGCATATCAGTGGAAGAGACCAACCATGTTTCTTAAGGAAGGAGATTCAATTCCTCCGGATGTTGACCCTGCTACAATCAGTTGGATCCCTGCAAACCATCCGTTTGCAACAACATCTAGTGATATTGATGAAGACTTGGCCCAGAACAATGTGCACCAAAAGCATGGTGTTCCCTTCCGTATTCAAGCTGAGCACGATGCTTTGCAGAGAAAGCTTGAAGCGCTCCAGGGTGTGAGTAACTCTGATACTCTGTACTCGATTCTGTCGTGTCTTCATGCTCTTCCTTCAGTTGATAGATGCATATATAACATTTGCTGCGTGGAACAGAAACTGAATAATTTATTTATAGATCCTAGAAATGGGAAGGATTTTGAGAGACCTGTTAAGTCGGAACCCAACTCTGATGAACAAGTAGAACAAAGCTTTACAGACCACGAAGCTGGAGAGTCGAAGCCTCCGAACTCGGGACATCTCCCAAGTTCTTTCGGGGTTCAATCCTCATCTGATGAAGCACAGAAATCCTGA 1749 48.08 MRPFRYLAGVNSSAISDSAEPQTYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGNVSGGASTRPPPPPASNKGLKKKILRSLPKYNFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDMWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTICFPAHVMASSWTLRFHSYSFQPYVWVRKPLVLSGLSELGIGYKCAGIRYGHLNINRNRHRIGRRFLINSAEGSGSTDSGRNVEDDEIMVKSGTGGVASRDYKGKLQEMIYSSPPGVFLMNRCTGNGLAIGFCIATACLAIVARVYLMGKSRSSHSGSVADLVRRGQLRSDRRGISKPLKYNDPFNNPLVKVDKSNSSVEMCGKVYRLAPVTLTKEEQSIHQKRRSRAYQWKRPTMFLKEGDSIPPDVDPATISWIPANHPFATTSSDIDEDLAQNNVHQKHGVPFRIQAEHDALQRKLEALQGVSNSDTLYSILSCLHALPSVDRCIYNICCVEQKLNNLFIDPRNGKDFERPVKSEPNSDEQVEQSFTDHEAGESKPPNSGHLPSSFGVQSSSDEAQKS 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 149396 156449 - CmoCh09G000340.1 Cmo09g00034 388036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00034 582 Pfam Ring finger domain 102 145 IPR001841 -
Cmo09g00034 582 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 516 580 IPR034572 GO:0009507|GO:0010020
Cmo09g00034 582 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 189 488 IPR034572 GO:0009507|GO:0010020
Cmo09g00034 582 MobiDBLite consensus disorder prediction 562 582 - -
Cmo09g00034 582 SMART ring_2 103 144 IPR001841 -
Cmo09g00034 582 MobiDBLite consensus disorder prediction 527 554 - -
Cmo09g00034 582 CDD RING-H2_EL5_like 102 145 - -
Cmo09g00034 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cmo09g00034 582 MobiDBLite consensus disorder prediction 526 582 - -
Cmo09g00034 582 SUPERFAMILY RING/U-box 87 150 - -
Cmo09g00034 582 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02087 Cmo09g00034 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00034 Cmo-Chr9:149396 Cmo15g00179 Cmo-Chr15:820052 8.65E-34 dispersed
Cmo03g00708 Cmo-Chr3:6139550 Cmo09g00034 Cmo-Chr9:149396 3.12E-14 transposed
Cmo06g00159 Cmo-Chr6:852721 Cmo09g00034 Cmo-Chr9:149396 3.54E-58 transposed
Cmo01g02087 Cmo-Chr1:14507770 Cmo09g00034 Cmo-Chr9:149396 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00034 - - bhj:120087009 610.527