Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00038 ATGAGTTTCTTTTTGCTTCTTTCTTTGCTATCTCTTTGTTGTGGTAGTTTTTCTCTCGAATTTGGTAAGAACAGTTCGTCAAGACCTTCGGTTGTGAACATTGGGGCTATTTTCTCTTTTGACTCCACCATTGGAAAAGTTGCTAAAATTGCCATTGAAGAAGCTGTTAAAGATGTGAATGCGGATCCCGGAATTCTTCCCGGAACCAAGCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATAAAACCGTAGCCATCATAGGCCCTCAGTCTTCTGTGGTTGCTCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTGGTCTCATTTTCAGCTACAGATCCTACTCTCTCTGCCCTTCAGTTTCCATTCTTCGTGAGGGCTGCGCAGAGTGATTTATTTCAAATGGCTGCAGTTGCTGAGATTGTTGATTATTATGGTTGGAAAGAGGTGATTGCTATATATGTGGATGATGATTATGGGTGGAACGGTATTGCAACATTGGGTGATAAACTTGCTGAGAAGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGAATCAGTGGTGACTCGAGCCCAAGTTTTGGATCAACTTGTTAAGGTTGCACTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCGCCTTAGTCTTTTCAGTGGCTAAATTCCTTCAAATGATGGGGAATGGATATGTATGGATAACAACTGATTGGCTTTCATCTCTACTAGATAGTGTTGTTCCTCTCCCTCTTGAGACCGTAGAGTCGATGCAAGGAGTTCTTTCTCTACGCCAGCACACAGCGGATTCAGATCAAAAGAAAGCTTTTCTTTCAAGGTGGAATAAGTTCACCGGTGGCTCTTTAGGTCTGAATGCATATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCCACAAATTTCTTAATCAAGGTGGGATCATCGCACATTCTGATGATTCCAGACTGCATTTAAATGAAAGCGGTAATCTTCATCTTGAAGCTATGACTATCTTTGATGGCGGAAAACGCCTGCTGGATAACATATTGGAGAGTGACTTTGTTGGTTTGAGCGGTGCCATTAAATTTGATTCTGACAGATCTCTTCCTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGAGTGGGTTACTGGTCCAACTATTCTGGTCTATCAGTTGATTCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCAAGCGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAATAGGTAAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTATTAAACATTGGAGTGCCACTTCGGGTCAGCTACAAGGAGTTTGTATCACAAATCAAAAGGACTGAAAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAGCTTATTACCCTACGCTGTCCCGCACCGATTCATAGCCTTTGGCGATGGCCATCATAATCCAAATTACACAGATCTTGTGTATGGGATCACAACTGGCAAATTTGATGCTGTTGTTGGGGACATTGCCATTGTCACGAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTGGTGGCTCCATTCCAAAAACTGAACACTGGTGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACCGCTAGTTTCTTCCTTTTTATCGGAATTGTTATCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGTCCACCTAAAAAACAATGTATTACAATTCTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCACAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGTTCTTTGTGGTTTTGATAATAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGACGAAAGGTGGCGAACCGATAGGCTTTCAAGTTGGATCGTTTGCTGAACGTTATCTGAGTGAGGAGCTGAACATATCTAAATCCAGGCTTTTTGCTCTTGGATCACCGGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGGGGGTGTTGCTGCTATAGTTGACGAACGTCCATATGTAGAAAGTTTCCTGTCGAGACAGTGCACATTCAGAGTTGTTGGTCAAGAGTTTACAAAAAGTGGCTGGGGTTTCGCATTCCCCAGAGATTCTCCCTTGGCTGTAGACATGTCGACGGCCATTTTGCAGCTCTCGGAGAATGGCGATCTTCAACGGATTCATGATAAATGGCTAATGAAAAGCGCCTGCAGCATGGACAGTGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTGTTTCTAATATGTGGGATAGTCTGTTTCATTTCTCTTGCCATATACTGCTTTCAGATTATTCGTCAGCTATACCGTTCTGATGAGAAAGGATCTGATCTGTCCATCAGTAGTGGATCACATTCTAATCGTCTTCGACGAATTATATCATTGATGGATGAGAAAAAAGAACCTTCTAAAAGAGAAAGCAAACGAAGGAAAGTTGAGAAATTATCTGAAAATGATAGGCATGATGATCAGTTGGAGATCAATCCCTGA 2754 42.67 MSFFLLLSLLSLCCGSFSLEFGKNSSSRPSVVNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPGILPGTKLWLQMQNSNCSGFLGMVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMAAVAEIVDYYGWKEVIAIYVDDDYGWNGIATLGDKLAEKRCKITYKVGISPESVVTRAQVLDQLVKVALMESRVMVLHVNPKLGALVFSVAKFLQMMGNGYVWITTDWLSSLLDSVVPLPLETVESMQGVLSLRQHTADSDQKKAFLSRWNKFTGGSLGLNAYGLYAYDSVWVVAHAIHKFLNQGGIIAHSDDSRLHLNESGNLHLEAMTIFDGGKRLLDNILESDFVGLSGAIKFDSDRSLPHPAYDIINVIGTGSRRVGYWSNYSGLSVDSPETLYSKPPNRSSANQKLYEVIWPGNTIGKPRGWVFPNNGKLLNIGVPLRVSYKEFVSQIKRTENFQGFCIDVFTAAVSLLPYAVPHRFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFQKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVIWILEHRTNDEFRGPPKKQCITILWFSFSTLFFAHKENTISTLGRLVLIIWFFVVLIINSSYTASLTSILTVQQLYSPITGIETLTKGGEPIGFQVGSFAERYLSEELNISKSRLFALGSPEEYAKALELGPDKGGVAAIVDERPYVESFLSRQCTFRVVGQEFTKSGWGFAFPRDSPLAVDMSTAILQLSENGDLQRIHDKWLMKSACSMDSAELESDRLQLKSFWGLFLICGIVCFISLAIYCFQIIRQLYRSDEKGSDLSISSGSHSNRLRRIISLMDEKKEPSKRESKRRKVEKLSENDRHDDQLEINP 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 167186 170801 - CmoCh09G000380.1 Cmo09g00038 388040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00038 917 CDD GluR_Plant 466 808 - -
Cmo09g00038 917 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
Cmo09g00038 917 PANTHER GLUTAMATE RECEPTOR 3.3 13 915 - -
Cmo09g00038 917 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Cmo09g00038 917 MobiDBLite consensus disorder prediction 882 917 - -
Cmo09g00038 917 SUPERFAMILY Periplasmic binding protein-like I 26 460 IPR028082 -
Cmo09g00038 917 Gene3D - 774 807 - -
Cmo09g00038 917 Gene3D - 463 578 - -
Cmo09g00038 917 PIRSF IGluLR_plant 1 916 IPR017103 -
Cmo09g00038 917 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Cmo09g00038 917 Gene3D - 50 396 - -
Cmo09g00038 917 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Cmo09g00038 917 Pfam Bacterial extracellular solute-binding proteins, family 3 490 808 IPR001638 -
Cmo09g00038 917 Gene3D - 147 421 - -
Cmo09g00038 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 915 - -
Cmo09g00038 917 Gene3D - 579 711 - -
Cmo09g00038 917 CDD PBP1_GABAb_receptor_plant 33 423 IPR044440 -
Cmo09g00038 917 Gene3D - 738 773 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02083 Cmo09g00038 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00170 Cmo-Chr2:810572 Cmo09g00038 Cmo-Chr9:167186 0 dispersed
Cmo03g00649 Cmo-Chr3:5886528 Cmo09g00038 Cmo-Chr9:167186 0 dispersed
Cmo09g00038 Cmo-Chr9:167186 Cmo20g00619 Cmo-Chr20:3031474 0 dispersed
Cmo01g02083 Cmo-Chr1:14490476 Cmo09g00038 Cmo-Chr9:167186 0 wgd
Cmo07g00376 Cmo-Chr7:1726781 Cmo09g00038 Cmo-Chr9:167186 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00038 K05387 - csv:101204862 1585.08