Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00041 ATGGCCACGGGTTTAGATTTTTCACCTCCCTTCACCCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGACCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGGCATAGTGTGAGCTCCATAAAGCTCCTTGGTCAAGCTGACTTGAGCTTGGATGCAGAAACTCTTGGGAATAAGTCGCCTGATGGGAAAACAGGATTCTTACCTGTCTTGAGATCGGGTAGCTGTTCAGAAAAAGGACCTAAGCAGTACATGGAAGACGAACACATATGCATAGATGATCTTGTTGAACATATCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCGTTCTATGGTGTATTTGATGGCCATGGGGGTACAGATGCCGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATTGTGGAGGACTCCTGTTTTCCAATTAGTGTAGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACTACTGCCCTAACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGTGCTGTTCTGGGTAGGAGGGGCAAGGCTATTGAGGTGTCGAAGGATCACAAGCCCAACTGTGCATCTGAAAAACTCAGAATTGAGAAGCTTGGTGGGGTGATATATGATGGCTATCTCAATGGCCAGTTATCTGTTGCGCGTGCTATAGGAGATTGGCACATGAAAGGTGCCAAGGGTTCTGCTTGCCCACTGAGTGCAGAGCCAGAGCTGCAGGAATTGAATCTGACGGAGGAAGATGAATTTCTAATAATGGGGTGCGATGGGCTTTGGGATGTTATGAGCAGTCAGTATGCTATTACAATGGCAAGAAAAGAGCTAATGCTACACAACGATCCAGAAAGATGTTCAAGAGAGCTGGTAAGGGAGGCGCTAAAGCGCAATACGTGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCCACTGATCCGCCCCCTCGGATAGAAATACCTCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCATGA 1161 45.31 MATGLDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMTSGKPPRHLSVMRHSVSSIKLLGQADLSLDAETLGNKSPDGKTGFLPVLRSGSCSEKGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAITMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSTDPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 173255 176440 + CmoCh09G000410.1 Cmo09g00041 388043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00041 386 MobiDBLite consensus disorder prediction 18 49 - -
Cmo09g00041 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Cmo09g00041 386 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 373 - -
Cmo09g00041 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Cmo09g00041 386 Gene3D - 77 354 IPR036457 -
Cmo09g00041 386 SMART PP2C_4 81 349 IPR001932 -
Cmo09g00041 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Cmo09g00041 386 MobiDBLite consensus disorder prediction 29 44 - -
Cmo09g00041 386 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Cmo09g00041 386 CDD PP2Cc 91 351 IPR001932 -
Cmo09g00041 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02082 Cmo09g00041 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01271 Cmo-Chr5:9862224 Cmo09g00041 Cmo-Chr9:173255 2.17E-106 dispersed
Cmo08g00579 Cmo-Chr8:3546049 Cmo09g00041 Cmo-Chr9:173255 3.74E-38 dispersed
Cmo09g00041 Cmo-Chr9:173255 Cmo12g01184 Cmo-Chr12:10699434 2.11E-110 dispersed
Cmo11g00299 Cmo-Chr11:1438182 Cmo09g00041 Cmo-Chr9:173255 2.29E-35 transposed
Cmo01g02082 Cmo-Chr1:14485174 Cmo09g00041 Cmo-Chr9:173255 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10313 PF00481 PP2C 1.30E-72 CL0238 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00041 K14803 - csv:101205355 761.14