Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00045 ATGGATCAGTTCGACGCTTTCTTTCGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTCGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTCCTTGGTCGACTGGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGCGAGCTAACACCTGAAATTGTTAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATCCCCCCACCAAAGATTGATCTTTCGGCTGTATCTGTCACTCAATCAACTTCAGTGACTGCTGCATCTCCTCCACAGATGAGTATGCCTGCGCCAACGGCACCTCAAAATTTTGGCTTTAGGGGACAAGGGGTTCCAAACGTGGGTGTGAATCCGCAGTATGTTTCAGCCCAGCCAAATCCTTCCATGAGGTTACCTCAAGGCACACCTGGTGCTGTTGCTTCCAACACGCAACTGGTTATTGCTGCTTCTGAATCCTCCGGAGGAGGAAATGTACTGGGTTCAAATCTTCCAAACCCAAATGGTTGGCTCACGCCAGGTGGTGGCCCTGCTGCTGGGCCTAGGGGAGTTAGCCCTTCTGTGCCTTCCCCAGCTACATCGTTATCACCAGCTTTAATGACTTCACAGTCTATGCCTAATAATACAGCACCAGCTGTTACTGGTAACGGATTTGCTTCTAAGTCGGCATTTGGTGCTGACATGTTTTCTGTTACTCCATCTCCACCTAGACCTGAATCTTCTGGACTCAACAATGCAGCCAATAATGGTACTGGTCCATCAGCGATTGTTGCAGGTTCCAGTGTATCCCAGCCTTTAAGTAAGCACAACTCCATGGAGTCATTGCAGAGTGCATTTGTTTCAAGACCAATATCTGATTCACAGTTGCAGCTCTCTCAGACATCATTGGAACCTAGCAAGGAGGTTCGAGCAACCAGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCTACTTCTGAAAATACACAGCTTACTTGGCCAAAAATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGATGGTAGAATTACCGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTTAGAGAGTTTTGTTTTGCTTTATATCTCATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGTGCTTCCAAGTAATCTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAATCTAACATTGTCCATCCGAATGCAGCTTGGGGTCCTCGTCCTGGATTTGGACAGCAGCAACCTCAGGTCACTGCTCGGTCAATGGCACCAACTGTAGGATTGAGGCCCCCAACAAATGTACTTGCTTCGAAGGTCGATGGTGCTAAACTATCCAATGAGCAGAAATCAAGGGCTCCAGTGTTGGAGGATTCATTTCTGGACGATTCTGAGAAGGGCCAACAAAATTCGGCTAGTTTAAATGCTCAAGATGCTACAGCAGCATCTGGGAAAATGGTTGGAGAGACAGCGAATGTTATTTTGGACTCAAAAGAAAAGATTAAATTCTATCGCACGATGATGCAGGAAATTGTTCTACATAAGAGCAGATGTAATAATAGATTAAATGAGATCACAGAAAGGGGATCTGCTGACAAGAGTGAGGCAGAATCCTTAGGAAAGAAATATGAAGAGAAGTACAAGCAAGTGGCTGAAATAGCATCTAAGTTAACCATTGAAGAAGCAAAATATCGTGATGTTCAAGAAAGGAAGACAGAGTTGCATCAAGCAATTATTAATATAGAACAAGGAGGAAGTGCTGATGGTATCCTCCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTTGATGTTAAATCGGCTGCTATAATCGAGCTTCCAGTAGGTTGGCAACCTGGAATTCCGGATGATGCAGCTATTTGGGATGAAGAATGGGATAAATTTGAAGATGAAGGATTTTCCAATGATCTTAACTTCGATACAAAAGGTGTTTCTGCCTCAAAACCAAAAATGTCAGAAAGTCAGGGAGAAAAGGGTCTAGCAGATTATAATTCGACTCCTGATTCATCGTCAAATGCCAATGAGAAAACAGGGAACTCCTTGAGTACCATCAATCATGGCCTTGAGAGTGATTCTGTGTATAGTCACAGCGAAGATGAATTAGCTAAAAGTCCATATGGCAGTCCTGCTGCAAAAACATCTCTCGAAAGCCCTTCTCATGAATTTTCAGATGCAGGTTATGAAAAGAGTTCGGAAGCATATAGAAATTTTAATGAGTCCGCTTGGGGCGCATTTGACAATAATGATGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAGCCAGACTCTGAAAAGCACAGAGATTTCTTTGGAAACAGTGATTTTGATACTAGCTCCGTCAAAACAGGATCCCCGAATGCAGATAGCTTCTTTCAGAGAAAAAGCCCATTTTTTGATGATTCTGTCCCTCCCACTCCCCTCTCTAGATTCGGCAACTCTTCCCCTCGTTACAGCGATGTGGGGGATCACTTCTTTGACCATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATGGCAGCTTTTCTCCGCAACGTGAGAAGTTCACGAGGTTCGATTCAATAAGCAGTTCTCGAGATTTTGGCCACAATCAAGAGAAGTTCTCAAGGTTTGATTCTATGAGTAGTAGCGTGGACTTCGGCCAGAGTAGCCAGAGGCACGCCAGGTTTGACTCCATTGACAGCTCCAGAGATTTCGGCCACGGCCATGGCGCCTTCTCTTTTGATGATACAGATCCATTTGGTACCTCTGGCCCGTTTAAAGTCTCATCAGAGAGTCAAAGTCCGAAGAAAAGCTCCGACAATTGGAGAGCTTTTTAA 3030 44.46 MDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLPKNVLAQIWMHADQRKTGFLGRLEFYNALRLVTVAQSKRELTPEIVKAALYGPAAAKIPPPKIDLSAVSVTQSTSVTAASPPQMSMPAPTAPQNFGFRGQGVPNVGVNPQYVSAQPNPSMRLPQGTPGAVASNTQLVIAASESSGGGNVLGSNLPNPNGWLTPGGGPAAGPRGVSPSVPSPATSLSPALMTSQSMPNNTAPAVTGNGFASKSAFGADMFSVTPSPPRPESSGLNNAANNGTGPSAIVAGSSVSQPLSKHNSMESLQSAFVSRPISDSQLQLSQTSLEPSKEVRATSPSPLISSGITTGARNSTSENTQLTWPKMKPTDVQKYTKVFMEVDTDRDGRITEVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAVLPSNLMFDETLLSMTGQSNIVHPNAAWGPRPGFGQQQPQVTARSMAPTVGLRPPTNVLASKVDGAKLSNEQKSRAPVLEDSFLDDSEKGQQNSASLNAQDATAASGKMVGETANVILDSKEKIKFYRTMMQEIVLHKSRCNNRLNEITERGSADKSEAESLGKKYEEKYKQVAEIASKLTIEEAKYRDVQERKTELHQAIINIEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGIPDDAAIWDEEWDKFEDEGFSNDLNFDTKGVSASKPKMSESQGEKGLADYNSTPDSSSNANEKTGNSLSTINHGLESDSVYSHSEDELAKSPYGSPAAKTSLESPSHEFSDAGYEKSSEAYRNFNESAWGAFDNNDDVDSVWGIKPVNTKEPDSEKHRDFFGNSDFDTSSVKTGSPNADSFFQRKSPFFDDSVPPTPLSRFGNSSPRYSDVGDHFFDHSSRFDSFSMQDGSFSPQREKFTRFDSISSSRDFGHNQEKFSRFDSMSSSVDFGQSSQRHARFDSIDSSRDFGHGHGAFSFDDTDPFGTSGPFKVSSESQSPKKSSDNWRAF 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 182454 192049 - CmoCh09G000450.1 Cmo09g00045 388047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 252 297 - -
Cmo09g00045 1009 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 257 297 - -
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 508 528 - -
Cmo09g00045 1009 SUPERFAMILY EF-hand 351 429 IPR011992 -
Cmo09g00045 1009 Gene3D - 1 96 - -
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 705 758 - -
Cmo09g00045 1009 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Cmo09g00045 1009 Gene3D - 355 429 - -
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 313 351 - -
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 829 843 - -
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 176 192 - -
Cmo09g00045 1009 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 934 - -
Cmo09g00045 1009 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 934 1009 - -
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 987 1009 - -
Cmo09g00045 1009 PANTHER EH DOMAIN 1 934 - -
Cmo09g00045 1009 PANTHER EH DOMAIN 934 1009 - -
Cmo09g00045 1009 SMART eh_3 2 88 IPR000261 GO:0005515
Cmo09g00045 1009 SMART eh_3 354 434 IPR000261 GO:0005515
Cmo09g00045 1009 CDD EH 4 70 IPR000261 GO:0005515
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 176 237 - -
Cmo09g00045 1009 Pfam EF hand 367 381 IPR002048 GO:0005509
Cmo09g00045 1009 Pfam EF hand 5 21 IPR002048 GO:0005509
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 823 857 - -
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 510 525 - -
Cmo09g00045 1009 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 698 795 - -
Cmo09g00045 1009 ProSiteProfiles EH domain profile. 382 429 IPR000261 GO:0005515
Cmo09g00045 1009 SMART efh_1 3 31 IPR002048 GO:0005509
Cmo09g00045 1009 SMART efh_1 37 65 IPR002048 GO:0005509
Cmo09g00045 1009 SMART efh_1 383 411 IPR002048 GO:0005509
Cmo09g00045 1009 MobiDBLite consensus disorder prediction 210 237 - -
Cmo09g00045 1009 SUPERFAMILY EF-hand 2 79 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00045 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1650.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00045 Cmo-Chr9:182454 Cmo19g00819 Cmo-Chr19:8073698 0 dispersed
Cmo01g02079 Cmo-Chr1:14469978 Cmo09g00045 Cmo-Chr9:182454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00045 Cmo_Chr09 FPKM 1.044969 0.96288 1.309155 1.656053 1.624469 2.399578 2.083106 1.944369 1.82132 1.971101