Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00047 ATGGCATTCGGCGCTTCCCGGCGTTATCTTTCGTATCAATTCAAAGGGTGCTTGTTGGGACGTCTCACCGGTGGCAGGTATCATTATCCCTTACCTTATCTGCCTTCGCTCTCATCAGCTTTATCATACTTGTTTTCAACCCTAGATGAACCATCAAATCTATTTGATGATGTTAGTGTTTTGGGTAATGGGATTCGGTATCAACGCAGTATCGACGAGCGCTTCGTTATGAGAGAGCTTTCTGATCTTTTACTAGTCAATCCTTATGGTTCGGTTTCTGACACCGTCAAAGAGAATCATACTGAGAAACAGGTGTCAATTAGGGCGGTTGATGGATTTTTACGACCAGAAGAAAAATTGCGAGGTGTTTTCCTTCAAAAACTGAATGGTAAAACAGCAATTGAACATGCTTTAGCTAATACTGATGTGAATTTGAGCCAAGATGTTGTGAACAAAGTACTGAACACGGGGAGTTTAGGTAGCAAAGCTATGATTACCTTCTTTGATTGGGCTATTAAACAGCCGTCGATACCTACAGATACTTCTAGTTACAACATCATTCTTAAAGCTTTAGGTAGAAGAAGGTTTTTTGACTCAATGATGGATGTTTTGCACAACATGACACGGAAGGGAGTGATTGTGAATATGGAAACAGTATCCATTGTGGTAGACAGTTTGGTCAAGGCTCGCCAAGTTTCTAAGGCACTTCAATTATTCAAAAACTTGAAAGAATATGGGTTGAAATGTGACACTGAAACCTTGAATATTCTTCTACAATGCATGTGTCGACGATCTCACGTGGGTGCTGCAAGCTCCTTCTTTAATTTAATAAAGGGAAGTGTTCCTTTCAATGCTATGGCATATAACATTTTAATTAGTGGATGGTCAAGATATGGTAGGCTTAGTGAAGTTGAGAGAATTTTGAAAGCAATGGAGGCTGATGGATTTTCTCCAGATTGTCTGACCTACACTTATCTTCTTGAGTGTCTTGGCAGAGCTAATCGCATTGATGATGCTGTCAAGATCTTTGATGAAATGGTTGCAAAAGGCTGTACGCCAGATGTTGGTTCTTATAATGCAATGATCTCCAACTTTATATGCATAGGTGATTTTGTTGAATGCCTGACCTATTACAAACGTATGTTGAGCAATAAATGTGAACCCGACATCAACACCTATTCCAATTTGATTATTGCCTTTCTTAAAGCCAAGAAAGTGGCTGATGCACTAGAAATGTTTGATGAGATGGTGGTAAGAATTATTCCCACTACGGGGGCAATAACATCCTTTATGAAACTTAGCTGTAGTTATGGTCCTCCACACGCAGCTATGTTAATCTACAAAAAAGCAAAAAAAGTTGGATGTAGGATATCCAAGAATGCTTACAAATTGTTGCTTATGCGGCTTTCTTTGTTTGGTAAATTTGGTATGCTATTAAATATATGGAATGAGATGCAAGAAAGTGGTTATGATCTTGACGTGGAAACTTATGAACATGCCATTGACTGCCTTTGTAAAACAGGGCAGCTTGAAAATGCTGTACTTGTCATGGGGGAATGTTTACGTCAGGGTTTCTTACCAAGTAGGAAAATACGTAGTAAGCTTAATAACAAACTGTTGGCCTCTAACAGAACAGAGATGGCATATAGGCTCTGGTTGAAAATCAAAGTTGCTCGTCATCAGGACAATTTGCAAAGATGTTGGCGTGCCAAGGGATGGCATTATTGA 1728 39.41 MAFGASRRYLSYQFKGCLLGRLTGGRYHYPLPYLPSLSSALSYLFSTLDEPSNLFDDVSVLGNGIRYQRSIDERFVMRELSDLLLVNPYGSVSDTVKENHTEKQVSIRAVDGFLRPEEKLRGVFLQKLNGKTAIEHALANTDVNLSQDVVNKVLNTGSLGSKAMITFFDWAIKQPSIPTDTSSYNIILKALGRRRFFDSMMDVLHNMTRKGVIVNMETVSIVVDSLVKARQVSKALQLFKNLKEYGLKCDTETLNILLQCMCRRSHVGAASSFFNLIKGSVPFNAMAYNILISGWSRYGRLSEVERILKAMEADGFSPDCLTYTYLLECLGRANRIDDAVKIFDEMVAKGCTPDVGSYNAMISNFICIGDFVECLTYYKRMLSNKCEPDINTYSNLIIAFLKAKKVADALEMFDEMVVRIIPTTGAITSFMKLSCSYGPPHAAMLIYKKAKKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDLDVETYEHAIDCLCKTGQLENAVLVMGECLRQGFLPSRKIRSKLNNKLLASNRTEMAYRLWLKIKVARHQDNLQRCWRAKGWHY 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 195021 196748 - CmoCh09G000470.1 Cmo09g00047 388049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00047 575 Pfam PPR repeat 496 525 IPR002885 -
Cmo09g00047 575 Pfam PPR repeat 218 247 IPR002885 -
Cmo09g00047 575 Pfam PPR repeat 183 212 IPR002885 -
Cmo09g00047 575 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 41 575 - -
Cmo09g00047 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Cmo09g00047 575 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Cmo09g00047 575 TIGRFAM PPR: pentatricopeptide repeat domain 357 390 IPR002885 -
Cmo09g00047 575 TIGRFAM PPR: pentatricopeptide repeat domain 218 251 IPR002885 -
Cmo09g00047 575 TIGRFAM PPR: pentatricopeptide repeat domain 392 419 IPR002885 -
Cmo09g00047 575 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Cmo09g00047 575 TIGRFAM PPR: pentatricopeptide repeat domain 183 215 IPR002885 -
Cmo09g00047 575 Gene3D Tetratricopeptide repeat domain 275 419 IPR011990 GO:0005515
Cmo09g00047 575 Gene3D Tetratricopeptide repeat domain 420 574 IPR011990 GO:0005515
Cmo09g00047 575 SUPERFAMILY TPR-like 223 417 IPR011990 GO:0005515
Cmo09g00047 575 Gene3D Tetratricopeptide repeat domain 129 267 IPR011990 GO:0005515
Cmo09g00047 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Cmo09g00047 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Cmo09g00047 575 Pfam PPR repeat 386 417 IPR002885 -
Cmo09g00047 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Cmo09g00047 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Cmo09g00047 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Cmo09g00047 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Cmo09g00047 575 Pfam Pentatricopeptide repeat domain 306 364 IPR002885 -
Cmo09g00047 575 PANTHER OS02G0304800 PROTEIN 41 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00047 - - - cmax:111476376 1111.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00047 Cmo-Chr9:195021 Cmo12g01031 Cmo-Chr12:9637202 1.62E-51 dispersed
Cmo09g00047 Cmo-Chr9:195021 Cmo15g00663 Cmo-Chr15:3240927 9.40E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006076 1 11 1 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00047 Cmo_Chr09 FPKM 6.089177 5.715199 8.219407 7.633675 7.715473 6.386647 8.651385 29.817135 32.422909 30.694508