Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00049 ATGATGGAGTGGCAGAACCAGCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGCCGCCGATGGAGTTGGTGGCCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTCCTAAGGCAGCAGATCTCTGTCTATGCTTCCATCTGTGACCAACTTGTCGAGATGCATAAGGCAATCACCGCCCAGCAGGACCTTGCCGATGCTGCAAACGAGAACTGTAAGATTAACCGTGGCCTTGCTGTTCGTTTCATCATCAGAACCATCTGCTTGTGTTTCCTGTTTTTGATCCCTTTGATGCTCCAACATGACTGGAGAAATAGACTCTTTAGGAAAATAACTTTGCTCCTTGACAACTTCAATGTTTTCTGGTTTTCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCTTGTGCTGCTGGTCACAAGATAACTGCTAGGCAGCGGTGGACGCCCACACCTGTGCAGCTTCAAATTCTTGAGCGGATTTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGATACAATATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGGAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACCGAAGTCGATTCTCCAAAGGAGAAAAAGACAAAACCAGAAACCTTACAAGATTATGAACATTTTGTTCCGAAGTTGAGCAACGTGTATCCTCAGAGATCTGAATTAGGTGCTGAAATCCTTTCCTTTGACACACAAACGAATAAAGGGGAGCCCATGTTTCAATCTTTTGGATCTGGTCATATCAGTCAGATGACCCCAACACAGAATCATAGAAATAATATGTCAAATGAAAAAATGAACGTACCGGACTACTCTCCTTACTCTCCTTGTGAAGGATATCACTTGGTTGAGTGA 1002 43.81 MMEWQNQQQQQNQTEQLQMQMQVEQLSNAADGVGGLYVKVMTDEQMELLRQQISVYASICDQLVEMHKAITAQQDLADAANENCKINRGLAVRFIIRTICLCFLFLIPLMLQHDWRNRLFRKITLLLDNFNVFWFSGMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDITLQLIQYGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETLQDYEHFVPKLSNVYPQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNHRNNMSNEKMNVPDYSPYSPCEGYHLVE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 208487 210344 - CmoCh09G000490.1 Cmo09g00049 388051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00049 333 MobiDBLite consensus disorder prediction 218 252 - -
Cmo09g00049 333 CDD homeodomain 160 222 IPR001356 GO:0003677
Cmo09g00049 333 PANTHER - 136 318 - -
Cmo09g00049 333 PANTHER - 2 79 - -
Cmo09g00049 333 MobiDBLite consensus disorder prediction 235 252 - -
Cmo09g00049 333 SMART HOX_1 158 225 IPR001356 GO:0003677
Cmo09g00049 333 PANTHER WUSCHEL-RELATED HOMEOBOX 13 136 318 IPR044559 GO:0003700
Cmo09g00049 333 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 79 IPR044559 GO:0003700
Cmo09g00049 333 SUPERFAMILY Homeodomain-like 159 222 IPR009057 -
Cmo09g00049 333 Gene3D - 162 226 - -
Cmo09g00049 333 MobiDBLite consensus disorder prediction 302 333 - -
Cmo09g00049 333 MobiDBLite consensus disorder prediction 302 318 - -
Cmo09g00049 333 Pfam Homeodomain 160 220 IPR001356 GO:0003677
Cmo09g00049 333 ProSiteProfiles 'Homeobox' domain profile. 156 221 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00049 - - - bhj:120085747 371.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02079 Cmo09g00049 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00143 Cmo-Chr6:768695 Cmo09g00049 Cmo-Chr9:208487 7.30E-67 dispersed
Cmo09g00049 Cmo-Chr9:208487 Cmo16g01322 Cmo-Chr16:9380247 3.03E-63 dispersed
Cmo09g00049 Cmo-Chr9:208487 Cmo01g02079 Cmo-Chr1:14469978 4.85E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10314 PF00046 Homeodomain 7.70E-18 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00049 Cmo_Chr09 FPKM 173.338791 177.974182 139.2715 142.840256 234.904373 243.672897 239.386459 181.576721 198.082886 178.07576